Cyprinodon variegatus (sheepshead minnow): 107087766
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Entry
107087766 CDS
T06110
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03020
RNA polymerase
cvg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107087766 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
107087766 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107087766 (polr2a)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107087766 (polr2a)
Enzymes [BR:
cvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107087766 (polr2a)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107087766 (polr2a)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107087766 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
107087766
NCBI-ProteinID:
XP_015234988
Ensembl:
ENSCVAG00000005156
UniProt:
A0A3Q2CFR0
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGVISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFISKIMKILRCVCFFCSKLLVDSN
NPKIKEILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQENEEDITKEKGHG
GCGRYQPRIKRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSNKAFEKKFRFDCTNERALRRVLQEDVVKDVLTNAHVQSVLEREFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPVSPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggtgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcgtcatcagcccagatgaacttaaacggatgtcagttactgaagggggtattaag
taccccgaaactacagaaggaggtcgccctaaactcggtggccttatggatccaagacaa
ggggtcatagaacgcagtgggagatgtcagacatgtgcaggcaacatgactgaatgccca
ggccactttggacacatagagctggcaaagccggtcttccatgtcggcttcatatccaaa
attatgaagattctccgatgtgtctgcttcttctgctccaaactattggtggattcaaac
aatccaaagatcaaagaaatcctggttaagtccaagggccagccaaggaagcgtttgacc
cacgtgtatgagctttgcaaaggcaaaaacatctgtgaaggaggggaggaaatggacaat
aaatttggaatggagccacaggagaacgaggaggacatcaccaaggagaagggtcacgga
ggctgtggacgctaccagccgcgcatcaaacgctcaggcttagagctgtatgccgaatgg
aagcacgtcaacgaggattcccaggagaaaaaaatcctgctgagccccgaacgcgtccac
gagatcttcaagcggatatcggatgaagaggacatcatcttgggcatggaccccaagttt
gcccgtccagaatggatgattgtaaccgtgctgcctgtgcctccgctggccgtgaggccc
gccgtggtcatgcagggttccgctcgcaaccaggatgatttgacccataaactagcggac
attgtgaagatcaacaaccagctgagaaggaacgagcaaagcggtgcagctgctcacgtc
atcgctgaggatgtgaagctccttcagtttcatgtggcaacaatggttgacaatgaatta
ccaggcctaccaagggcaatgcaaaagtccggccgtcctctcaaatccataaagcagcgc
ttaaagggtaaagagggacgagttaggggcaacctgatgggcaaacgtgtggacttctcc
gcccgaaccgtcatcaccccggaccccaacttgcagatcgaccaagtgggcgtgcccagg
tccatcgcagccaacatgacctttccagagatcgtcacaccctttaacatcgacagattg
caagagctggtacgaagaggcaacagtcagtatcccggagccaaatacatcatccgagac
aacggagacagaatcgacctgaggttccaccctaaaccaagtgaccttcacctgcaaatc
ggctacaaggtggaaagacacatgtgcgatggggacatcgtcatcttcaaccgacagcca
acactacataaaatgtctatgatggggcatcgagttcggatcctgccttggtccacgttc
cgacttaacctcagtgtcaccactccttacaacgccgactttgacggggatgagatgaac
ctccacctccctcagtccctggagaccagggcggagattcaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
accgccgttcgcaaattcactaaaagagacgtgttcctggagaggggtgaggtgatgaac
ctcctcatgttcctgtctacctgggacgggaagatgcctcagccggctattctcaaaccg
cgtcctctgtggacaggcaagcagatcttcagcctcatcattccaggacacattaatgtg
atccgaacacacagcacgcacccggacgacgaagacagcggcccttacaaacacatctca
cctggcgacacaaaggtcatagtggagaacggggagttgatcatgggcatcctgtgtaag
aagtctctgggaacctcagctggctccctcgtccacatctcctacctggagatgggccat
gacatcaccagactcttctactccaacattcagaccgtggtcaacaactggctgctcatc
gaaggtcattccattggtattggtgactccattgctgatgccaagacgtacctggacatc
cagaacaccatcaagaaggccaaacaggatgtgatagaagttattgaaaaagctcacaac
aacgagctggaacccacacccggtaacactctgaggcaaacctttgagaaccaggtgaac
cgtatcctgaacgacgctcgtgacaaaacgggatcttctgctcagaagtccctgtctgag
tacaacaactttaagtccatggtggtggctggctccaagggctccaagatcaacatctca
caggttatcgctgtggtgggccagcagaacgtggagggtaagcggatcccatttgggttc
aagcaccgcaccctgcctcacttcattaaggatgactacggccctgagagcagaggcttt
gtggagaactcgtacctggctgggctgacgccaacagagttcttcttccacgccatggga
ggcagagagggtctgatcgacacggctgtcaagacagcagagacgggttatattcagcgt
cgtctgatcaaatctatggagtctgtgatggtgaagtacgacgcaacggtgcgaaactcc
attaaccaggtggtgcagctgcgctacggagaagacggtttggcaggagagaatgtcgag
ttccagaacctggcaacactgaagccctccaacaaggcttttgaaaagaagtttcgcttt
gattgcaccaacgagcgcgcgctgagaagggtgttgcaggaagatgtggtcaaagacgtg
ctgacaaatgcacatgtgcagagcgttttggagagggagtttgagaagatgagggaggac
agggagattctgcgagccattttccccactggtgacagtaaggtggtgctgccgtgcaac
ctggcccgaatgatctggaatgctcagaagatcttccgaatcaacactcgaaccccgaca
gacctaaatcctctgcgagttgttgaaggtgttcaggagctcagtaagaagctggttatc
gtcaacggtgatgatcctctaagccgacaggctcaggaaaacgccacgctgctcttcaac
atccacctgcggtccacgttgtgctcaaaacggatgacggaggagttccgcctgtccacc
gaggcgtatgactggctgctgggagagatagagacaaagttcaaccagtccattgcccat
cctggtgaaatggtgggcgctctcgctgctcagtccctgggagaaccggccacccagatg
actctgaacactttccactacgccggagtgtcggccaagaacgtcaccctgggtgtccct
cgtctgaaagagttgatcaacatttcaaagaggcccaagacgccctcgcttacagttttc
ctgctgggtcaggcggcgcgtgacgcagagagggcaaaggacatcctgtgtcgactggag
cacacgacgctgaggaaggtgactgccaataccgccatctactatgaccctaacccccag
aacacggtggtggccgaggatcaggagtgggtgaatgtctactatgagatgccggacttc
gacgtgacccgcatctccccgtggctgctgcgcatcgagctcgaccggaagcacatgaca
gaccgtaaactgaccatggagcagatcgccgagaagatcaatgcaggttttggagatgac
cttaactgcatcttcaacgacgacaacgctgaaaagctggtgctccgaattcgaatcatg
aacagtgacgagaataagtttcaggaggacgaggaggttgtggataaaatggacgatgac
gttttcctgaggtgcatcgagtccaacatgctgacagacatgacgctacagggtatcgag
cagatcagcaaggtgtacatgcatctgcctcagacggacaataagaagaagatcatcatt
acggaggacggagagttcaaggccctgcaggagtggatcctggagacggacggagtgagc
ctcatgagggtgctcagcgagaaggacgtcgatcccgtcagaaccacctccaatgacatt
gtggagatcttcacggttttgggcattgaagctgtccgaaaagctctggagagagagttg
taccacgtcatctccttcgacggctcctacgtcaactaccgtcacttggctctgctttgt
gacaccatgacctgccgtggccacctgatggccatcactcgtcacggcatcaaccgtcaa
gacacgggaccactcatgaagtgttcctttgaagagacggtggatgtgctaatggaggca
tcttctcacggagagtgcgacccgatgaaaggcgtgtcggaaaacatcatgcttggccag
ctcgccccagcagggaccggctgcttcgacctgctgctagatgccgagaagtgcaagtac
ggcatggagatcccgacaaacatacccggcatcagcgtagcgggacccactgggatgttc
ttcggctcggttccaagtcccatgagcggtatgtctcctgccatgactccttggaacacc
ggggccaccccagcttatggagcatggtcccctagtgttggaagcggcatgacccctgga
gcagcaggtttctctcccagtgcagcatctgatgctagcggcttctctcctggatactcc
ccagcctggtctcctacaccggggtcaccagggtctccaggacctgtcagtccatacatc
ccatctccaggtggagctatgtcgccaaattactcccccacctcccccgcctacgagccg
cgttccccaggtggctacaccccacaaagcccaggctactctccaacatcgccttcctac
tcgcctacctctccctcttattcccccacaagccccaactacagcccgacgtctccatct
tactcccccacttcgcccagttactctccaacgtctccttcttactctccaacgtccccc
tcatactccccgacgtccccctcgtactcccccacctccccctcgtactccccgacgtct
ccttcatattccccgacctctccaagttacagcccaacatcgcccagctacagcccgacg
tcgcccagctactcccctacttcaccgtcctactcgccaacctccccctcttactctcca
acgtctccatcctactcccccacatccccctcctactcccctacctctccgtcctactca
ccgaccagtccgagctacagcccaacatcgccgaactacaccccaacgtcccccagttac
tctcccacctccccttcctactctccaacgtcaccttcctattccccaacttcccccaac
tacacaccaaccagtccaaactactcccccacttctccctcctactcccctacgtctccc
tcttactctccctccagtccacgttacacccctcagtcacccacttacacacccagctcg
ccttcgtacagccccagctctccatcatactccccaacctcaccaaaatacaccccaacc
tcaccctcatacagccccagctctccggagtacaccccaacatcgccaaagtactcccca
acgtcgccgaagtactccccgacttcgcccaagtactcccccacctctcccacttattcc
ccgacgactccaaaatacagccccacctcgcccacctactcccctacctcccctacctac
acccccaccagccccaagtactccccgacttcccccacatactccccaacctcacccaag
tactcgcccacatctcccacctactcgcccactagccccaaaggctccacctacagtccg
acctcccccggctacagccccacctcccctacctacagcccggccatcagccccgacgac
agcgacgaggagaacaactga
DBGET
integrated database retrieval system
