Cyprinodon variegatus (sheepshead minnow): 107088779
Help
Entry
107088779 CDS
T06110
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107088779 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvg03021
]
107088779 (polr1b)
Enzymes [BR:
cvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107088779 (polr1b)
Transcription machinery [BR:
cvg03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107088779 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Birna_RdRp_palm
Motif
Other DBs
NCBI-GeneID:
107088779
NCBI-ProteinID:
XP_015236645
Ensembl:
ENSCVAG00000005824
UniProt:
A0A3Q2CHF8
LinkDB
All DBs
Position
Unknown
AA seq
1134 aa
AA seq
DB search
MEFTDKWTNLPPGPSLKNLTDGGFGKLKDKQHAAVQDLTKAHIESFNQAVTEGLTRVVQA
IPPLEFMFKQDRVTLTFVEATIHNPVVTKGSVCTEMKVFPAECRGRRCSYKGKLVADVSW
AINGIPKGIVKQSLGQVPIMVKSQLCNLHGLSPKELVKHHEEAEEMGGYFIMNGIEKVIR
MLIMPRRNYPIAMSRPKWKSRGQGYTQYGISMRCVREEHSAINMNLHYLENGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREDNSFYKTCVSEMLRMVSEESCTTRSKV
LDYLGERFRVKLNLPEWYTNEQCANFLLNECICIHLKSDIEKFYLLCLMTRKLFTYAKQE
CMEENPDSLMCQEVLTPGQLYLMFLKEKLTAWLVSVKLGFDKRGSKLGNGWSTENVMKML
NMGSDLTKPFEYLLATGNLHSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAR
MRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEIVAATSYTTSLPALLCSLGVT
PVDGSPGRAFSDCYPVVLDGAVVGWVEAELAQAVVDSLRRFKVLGQKKVPPWTEVVLVPK
TGKASLYPGLFLFTTPCRMMRPVQNLALGKQELIGTFEQLYINVGILEGEIEAGVTTHQE
LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSYMDRSDNKLYRLQTPQSA
LVRPYMYDHYSLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVD
LGEKVRGDDSIVFGTKPGDPKVNEKLDADGLPHIGSVLQYGDPYYCYISLNTGQSFVTFY
KNQEACVVDNIKICSNDTGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLSHDATPFTFSEENSALDY
FGEMLRAGGYNYYGTERLYSGLSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLQDRLFNCSDRSVAQVCVDCGSLISPLL
EKPPPSWSAMRHRETVCTLCGKSDSIDSVSVPYVFRYFVAELAAMNIKVKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggagtttactgataagtggacgaatttacctccaggaccgagtctgaaaaacctgacg
gacggagggttcgggaaactgaaggacaaacagcatgctgcggtgcaggacttgaccaaa
gctcacatcgagtcgtttaaccaggctgttactgagggactcacacgggtggttcaggcc
atcccacccttggagttcatgttcaaacaggacagggtgaccctaacatttgtggaagcc
accattcacaacccggtggtcaccaaggggagcgtctgcacagagatgaaggtgttccct
gcagagtgtcggggaagaagatgttcctataaagggaagctggtggccgacgtcagttgg
gcgattaacggaattcctaaaggtatcgtgaagcagtcgctgggccaggttccgatcatg
gtgaagtcacagctatgcaacctccatggcctgtcccctaaagagctcgtaaagcatcac
gaagaagcagaggaaatgggaggttacttcatcatgaacgggatcgagaaggtgatccgt
atgctgatcatgccgaggaggaactatcccattgccatgtccagacctaagtggaagagc
aggggacagggatacacccagtatggtatttctatgcgctgcgtgagggaggagcactct
gccatcaatatgaaccttcattatctggaaaacggcaccgtgatgctgaacttcatctac
cagaaggagctcttcttcctccctttaggctttgctctgaaggcgctggtagacttcaca
gatttccagatctaccaggagctgatcaaagggcgtgaggacaactccttctataaaacc
tgtgtgtcagaaatgctgcgcatggtgtcggaggagagctgcaccacccgcagcaaggtg
ctcgactacctgggagagcgctttagggtaaagctgaacctaccggagtggtacaccaac
gaacagtgcgccaactttctcttaaacgaatgcatctgcatccacctgaagtctgacata
gaaaagttctacctgctttgtctcatgacccggaagcttttcacgtatgccaaacaggag
tgcatggaggagaatccggacagcttgatgtgccaggaggttctcactcctggtcagctc
tacctcatgtttctaaaggaaaaactgacggcgtggctggtgtccgtaaagctgggcttc
gacaaacgagggtctaaactgggcaatggatggagcactgagaacgtgatgaagatgtta
aacatgggatcagatctgaccaaaccttttgaatatctactggccaccgggaacctccac
tccaagacaggtctcggcatgctgcagaacacgggcctctgtgtggtcgctgacaaactc
aacttcatccgctacctgtcccacttccgctgcgtccacagaggagcggcgttcgccagg
atgagaaccacgtctgtcaggaagctgctgccggagtcctggggtttcctctgtcccgtc
cacactccggacggagagccctgtggactgatgaatcacatgaccgccagctgtgagatc
gtcgctgccacctcgtacactacatcccttcctgctctgctgtgctccctgggtgtgacg
ccggtggacgggtctcccggtcgagccttttcagactgctaccccgtggttctggacgga
gctgttgtaggctgggtggaagccgagttagctcaggccgtcgtcgactcgctgcgcagg
tttaaggtgctgggtcagaagaaggtccccccctggactgaggttgtcctggttcctaag
acgggaaaggccagcttatatccaggcctgtttctcttcacgacgccgtgccgtatgatg
cgacctgtgcagaatttagctcttgggaagcaagagctgatcgggacctttgaacagctc
tacatcaacgtggggatcctggagggagagatagaggcaggtgttactacgcaccaggag
ctgtttcctcacagcatgctcagtgtggtggccaacttcatcccttactcagaccacaac
cagagtcccaggaacatgtaccagtgtcagatgggtaagcagactatgggtttcccgctg
cactcctacatggatcgctccgataacaaactttaccggctgcagactccacagagcgct
ctggtcaggccctacatgtacgaccattacagcctggacaactaccccagcggcaccaac
gccatcgtggccgtcatatcctacacgggctacgacatggaagacgccatgatcgtgaac
aagtcgtcctgggagaggggctttgctcacgggagcatctacaagacggagttggtggac
ctgggggagaaggtgaggggagacgacagcatcgtgttcgggaccaagccaggcgacccg
aaggtgaatgagaagctggatgctgatgggctgcctcacatcggatctgtgcttcagtat
ggagacccctactactgctacatcagcctgaacacaggccaaagcttcgtcaccttctac
aagaaccaagaggcttgtgtggtcgacaacatcaagatctgcagcaacgacacgggctca
ggtcgttttaaacgcgtctgcatcaccgtacgagtgccgcgaaaccccaccatcggcgac
aagtttgccagccgccacggacagaagggcatcctgagccgtctgtggccggcggaggac
atgcccttcaccgagagcggcatgaccccggacatcctgttcaacccgcacggcttcccc
tcccgcatgaccatcgggatgctgatcgagagcatggccggaaagtccgccgccctgcac
ggcctgagccacgacgccacgcccttcaccttctccgaggagaactctgcgctggattac
ttcggggagatgctccgagcgggcggctacaattactacggcacggagaggctctacagc
ggactgagcggccaggagctggaggcggacatcttcatcggcgtcgtctactatcagcgg
ctgcgtcacatggtctccgacaaattccaggtgaggaccacgggagcacgggataaggtg
accaaccagccggtcggaggaaggaacatccagggaggcattcgttttggggagatggag
cgagacgccctgctggcccacggctcctccttcctgcttcaggaccgcctgtttaactgc
tcggaccgctcggtcgctcaggtgtgcgtcgactgcggcagcctcatttccccgcttctg
gagaagcccccgccctcctggtcggccatgcgccaccgggagacggtctgcaccctgtgc
gggaagagcgactccattgactccgtttctgtcccgtacgttttccgttacttcgtggct
gagctggcagccatgaacatcaaagtcaaactggacgttaagtga
DBGET
integrated database retrieval system
