Cyprinodon variegatus (sheepshead minnow): 107092008
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Entry
107092008 CDS
T06110
Name
(RefSeq) glutamate receptor ionotropic, NMDA 3A-like
KO
K05213
glutamate receptor ionotropic, NMDA 3A
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04020
Calcium signaling pathway
cvg04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
107092008
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
107092008
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107092008
Ion channels [BR:
cvg04040
]
Ligand-gated channels
Glutamate (ionotropic)
107092008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Adeno_PIX
DUF2107
Motif
Other DBs
NCBI-GeneID:
107092008
NCBI-ProteinID:
XP_015241760
Ensembl:
ENSCVAG00000015104
LinkDB
All DBs
Position
Unknown
AA seq
1067 aa
AA seq
DB search
MRCSRGAGMTRSNGIMMVMDVSTARPGAGVSPPLCFLLCALLFHPPCALSHPQPCQVLKR
IGHTVRVGALHVHPRLVAAAPGSGYEGAEGPFARDQPLEFGKAVKTGAGAPGYGNLRTRA
AANSQRGTSRIKSQARQREGNPSKEDGVFSPRELVLLAAEALNRAGLLPYNLSLEIVMAV
GSALGELPAFSYSSTDIPEDEDPLSFLESVCHTVVVQGVSAMLAFPRNRDELVKLEFISL
ALQVPVVSVVQKEFPRKSENGLHFQMAMQSVAAPPHQLLYYLLMMNGWWDISIVLCQEWN
ISDFLLLIKNNTRFRLGALVNLNKTTLPPLSSSLSSSAETTSAPVGVEVLSLSYFSPTAS
SFSSNSSSKPDQQQGLIRQLEALREHSSTRGVVTFGCDIREVRRLWTLATRMTLPEFHWV
LGDSQNVAELRTDGLPLGLLAHGMMGSPSLDHYVQDSLEFVARAVGSAAQENPALALIPG
TTNCMDVQQNNGSSGEFLARFLANTSFEGQSGFISKESHSQNIISEAHHYIWSLQLDPLG
QPTWTRLGRWRRGRVLMDQRAWPSHQGSGGGGDWRRSARLHMRVVTLVEHPFVFTREVDG
DGLCPAGQLCLDPLTNESSVLQGLFQKLSGHNGSVPTELKKCCYGYCIDLLEKLAEDIGF
TFDLYIVGDGKYGGYKNGRWTGLVGDLLSGAAHLAVTSFSINSARSQVIDFTSPFFSTSL
GILVRTRDTAAPIGAFMWPLHWSMWLGIFVSLHVTAVFLTLYEWHSPFGMTPRGRNRNRV
FSFSSALNVCYAILFGRTVAIKPPKCWTGRLLMNLWAIFCLFCLSTYTANLAAVMVGEKT
YEQLSGIHDPKLHHPSQGFRFATVRESSAEDYVKKSFPEMHEYMRRYNVPATPDGIHNLK
ADPQKLDAFIMDKALLDYEVSIDADCKTLTVGKPFAIEGYGIGLPQNSPLTSNFSELVSQ
YKSDGFMDMLHDKWYKVVPCGKRSFAVTETLQMGIKHFSGLFVMLCVGVALSLLTTIAEH
IVYKLVIPRVKEPRSKYWLHTSQRLHRALNSVFVDDQVPAVPKPEKR
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgcggtgcagccgtggagcggggatgacgaggtcgaacgggattatgatggtgatggat
gtctcgacagcacgtccaggcgccggggtctcgccgcctctgtgcttcctactgtgcgct
ctccttttccaccctccgtgcgctctctcgcacccgcagccatgccaggtgcttaagcgg
atcggccacacggttcgggtgggagctctgcacgtccatccccgcttggtggccgcagct
cctggcagcggctatgaaggcgccgagggacctttcgcaagagatcagccgctggagttt
gggaaagcagtcaaaacaggtgccggtgcgcctgggtatggaaacctcaggactagagcc
gcagcaaacagtcagcggggaacaagtaggattaaaagccaggcgagacagcgagaaggg
aatccctcaaaggaggatggcgtgttctcacctcgggagttggtcctgctggcggctgag
gctctgaaccgggccgggttgctaccttacaatttatccctagagatagttatggcagta
ggttcggcgctgggcgagctgccagccttctcatactcctccacggacattcccgaagac
gaagacccgctgtctttcctggagagcgtgtgtcacacggtggtcgtgcagggggtctcc
gctatgctcgcctttcctaggaaccgggatgagcttgtaaagttggaattcatttcgctg
gcgctgcaggtgccagttgtcagcgtcgtgcagaaggagtttccgcgtaaaagtgagaat
ggtcttcattttcaaatggcaatgcagtctgtagcggcccccccgcaccagctcctctac
tatctgctgatgatgaatggttggtgggacatcagcattgtcctatgccaggaatggaac
atcagtgactttctcctcctcattaaaaacaacacccggttccgcttgggagctctggtc
aacctaaataaaacaacactgccaccactatcatcttcactatcatcctcagcagaaaca
acaagtgcccctgtgggagtggaggtgctatccttatcctatttttcaccaacggcctca
tcattttcttcaaattcttcttccaaaccagaccagcagcaaggcctcattcggcagctg
gaagctttgagggaacattcatccacacgaggagtggtaacgtttgggtgtgacattcgg
gaggtgcgcagattatggacacttgcaactcgaatgactctcccggaatttcactgggtt
ttgggggacagccaaaatgtggctgagctgagaacagacgggttaccactggggctactt
gcacatggaatgatgggatccccttcactggatcattatgttcaggactcactagagttt
gtagcacgggcagtgggcagtgccgcccaggagaatcctgccctggcactcattcctgga
actacaaactgtatggatgtacaacaaaataatggcagctcaggggaattcttggcaaga
ttccttgccaacacatcatttgagggccagagtggttttatatccaaagaaagccatagt
cagaatatcatctcagaggcccatcactacatctggtctctccagctggaccctcttggc
cagccaacatggactcgtctcggacgttggcgtcgagggagagttctgatggaccaacgc
gcctggccaagtcaccaagggtctggtggtgggggagattggcgtcgttctgctcgattg
cacatgcgagtggtgactttagtggagcaccctttcgtttttacccgtgaggttgatggt
gatggactgtgtccagcaggccagctgtgtttggacccacttaccaatgaatcatctgtt
ttgcaagggctctttcagaaactttcagggcacaatggatctgttcctacagaactgaag
aaatgttgctatggatactgcattgacctgctagaaaagctggcagaggatattggcttc
acatttgacctgtatattgttggcgatgggaaatatggaggatacaagaatggtcgttgg
acaggattggtgggcgatttactaagtggtgctgcccacctggcagtgacatcattcagc
attaattcagccagaagtcaagtcattgactttacatcaccctttttctccaccagcctg
gggattctggttcgtacccgtgacacagcagcccccatcggtgccttcatgtggcccctc
cattggtccatgtggctaggcatctttgtttcactccacgtcactgctgtcttcctcacc
ctgtacgaatggcacagtccctttgggatgacgcctcgaggacgcaatcgcaaccgcgtc
ttctctttctcctcagccctaaatgtctgctatgctattctctttggaagaacagtagcc
atcaagcccccaaagtgctggactggtcgtctactgatgaacctttgggcgatcttctgt
cttttctgtctgtccacctacactgctaacttggcggctgtcatggtcggggagaaaacc
tacgagcaactgtcagggatacacgatccaaagttgcaccatccctctcagggattccgc
tttgctacagtaagagaaagcagtgcagaagactacgtcaagaagagtttccctgagatg
catgagtatatgagaagatacaatgtcccagctacacctgacggcatacataatctaaag
gctgaccctcagaaactggatgcattcatcatggacaaagctctgctggactatgaggtt
tccatagatgccgactgtaaaaccttaacagtggggaaaccatttgccatagaaggctac
ggcattggcctccctcagaactctccactcacctccaacttctcagagcttgttagtcag
tacaaatccgatggcttcatggacatgctgcatgacaaatggtacaaggttgtgccctgt
gggaaacgcagctttgctgtaacggagacactgcagatgggtataaagcatttctcgggt
ctctttgtgatgctgtgtgtgggcgtggccttatctcttctgaccacgatagcggaacac
attgtgtacaagctggtgatcccgagggtcaaggagccacgctccaaatactggctgcac
actagtcagagattacacagagccctcaattcagttttcgttgatgaccaagtaccagct
gttccaaagcctgagaaaaggtaa
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