Cyprinodon variegatus (sheepshead minnow): 107093744
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Entry
107093744 CDS
T06110
Name
(RefSeq) glutamate receptor ionotropic, NMDA 3B-like
KO
K05214
glutamate receptor ionotropic, NMDA 3B
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04020
Calcium signaling pathway
cvg04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
107093744
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
107093744
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107093744
Ion channels [BR:
cvg04040
]
Ligand-gated channels
Glutamate (ionotropic)
107093744
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
107093744
NCBI-ProteinID:
XP_015244475
Ensembl:
ENSCVAG00000014452
LinkDB
All DBs
Position
Unknown
AA seq
1304 aa
AA seq
DB search
MVSLSGLWSRCLAPGRTRLLFISVRVLLLLLLLLLTPFSSAETCFPHPAPCHILARIGHT
VRIGALLPTRQPARIQNALNRALASIRHQSGGTDSTTVSSQPAPLLPYNLTLEMVARSPS
GWDPESLSHSACQDLVIRGVTAVLAFPRSREELIQVEFLSSFLEIPFVSILEDTEPLVTK
NQYHLQMSARVPPSTLGSLLLAVLQNGDGDKDIGNRGEGRWGGAAVICPGWDEGSDSLLT
HLQRHSGPAWHLWDIINLTRITGGRDRRGEAREERREDQMEEEALNIISSSLLRSPSPIS
SVLLMGSDPECLSSVLRAAQRLAPSLPALQWIMGYPLSPDSLHTLGGPLGLLAYGEVGRK
PISFYIRDALQLIGRAVTAATMVKPELALVQNLVNCFEQPNKHELPSSGQYLSRFLSNIS
FTGSTGLIQVDAYVSRVLSSQLFHVWSLKRGALGQPAWVTVGQWTRGRLELEGGILGGLG
NSQGQGLGAGVRGGDGQGDGYLGGLWRPGLSVEGHRLRVVTLVEHPFVFTREVDEDGLCP
AGQLCLDPRTNRSDIINALFNQLHNPNSTVMDWEGIDLPGDLRKCCYGYCIDLLEKLAED
MGFTFDLYIVGDGKYGALSGTGRWTGLVGDLLNGTADMAVTSFSINSARSRVIDFTSPFY
STSLGILVRSRDTAAPIGAFMWPLHWSMWVGIFVTLHLTALFLTLYEWNSPFGMTPHGRN
RLRVFSYSSALNLCYAILFGRTVATKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAAVMV
GEKTFEQVSGIHDDKLHHPSLGFRFGTVRESSAEDYMKKSFPEMHDYMRRFNQPTTPEGV
HMLKTDPPALDAFIMDKALLDFEVSIDADCKLLTVGKPFAIEGYGIGLPQGSPLTRNVSE
FVSRYKSDGFMDMLHDKWYKVVPCGKRVFAVTETLQMGIQHFSGLFVLLCMGVGGALLTL
AGEHTFYHLVVPRLRRSNTLQYWLHTSQVENCTLHRKQQQQPPPSPPTSLPASTTAGETG
SSSPSHEHKEKRVHFDLDTLHSYRLRTHTASVRGRPGMVGRPGLGLGGFGFGSFTSPPQI
NLHANGGPVSTLASTGLLLSPLGNRATQTSLWEGELQELQVKIETFRNQLREALARRAEI
QTSLERERSGLGRRETSLERERDRQKVQTIPTDRSSSTQSRLPERDRTSQLQTLNNQQLG
RPNQTAAAATAGLGRSSQLNTVNSLERGRATQSRPSVTVTGERTVQSRTSTSLERSQVNQ
QGAGNITVQTRNTSSLDRQKANLSRTLNTLERTKANQSSVNTGT
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggtgtctctttctggactctggagccgctgcctcgccccggggagaacccgtctcctt
ttcatctctgtcagagtgcttctgctgctgcttctccttctgttgacccccttctcgtct
gccgagacctgcttccctcaccctgcgccctgccacatactggcacggatcggacacacc
gtgcgcatcggtgcgctcctgccgacccggcagccggcgcggatacagaacgcgctcaac
cgcgccctggcgagcatcaggcaccagagcggcgggacggactccaccaccgtgtcctcc
cagccggcccctctgctgccctacaacctgaccctggaaatggttgcgcggtccccgtcg
ggatgggacccggagtcgctgtcccacagcgcctgtcaggacctggtgatcagaggtgtg
acagccgtgctcgcttttccacgctccagggaggagctgatccaggtggagttcctgtcc
tctttcctggagatccccttcgtttccatcctggaggacacagaaccacttgtcactaag
aatcagtatcaccttcaaatgtcagctcgtgttcctccatcgaccctcggcagccttctg
ctggcagtcctacagaatggagatggggacaaggacataggaaaccgcggagaaggcagg
tggggaggagcagctgtgatctgccctggatgggatgaaggcagcgacagcctgctgact
cacctgcagaggcacagtggtcctgcttggcatttgtgggacatcatcaacttgactcgc
atcacaggaggtagagatagaaggggggaggcaagagaggagaggagggaggatcaaatg
gaagaagaggctttgaacatcatctcttctagtttgttgcgctccccctcaccgatctcc
tccgtgctcctcatgggatctgatccagagtgtctctcatctgtcctgcgggccgctcag
cgtcttgcaccatcacttccagcactgcagtggatcatgggatatcctttatctcctgat
tcactgcacaccctgggaggtccccttggtctgttggcctatggggaggttggacgcaaa
ccaataagcttctacataagggatgctttacagctgattggaagagcagtcactgcagcc
accatggtgaagccagagttagctctggttcaaaacttagttaactgctttgaacaacca
aacaagcatgagctaccttcttctggacaatatctttccaggtttctgtccaacatttcc
ttcactggctcgacaggactgatccaagtggatgcatatgtttctagagtcctctcctca
caactcttccatgtatggagtcttaaaagaggagccctgggtcaaccagcttgggttact
gtaggacagtggacccgtggacgactggagctggagggcggcattttgggaggacttggt
aacagccagggacaaggtcttggagctggagtaagaggaggggacggccagggagatggc
tatttgggaggactctggaggccaggactttctgttgagggacaccgcctccgtgtggtg
acgttggtggaacacccatttgtcttcacacgggaggtagatgaggatgggttgtgccca
gctggtcagctttgtctggatcctagaaccaaccgatctgatataatcaatgctctcttt
aaccagctacacaaccccaactctacagtaatggactgggaaggaatcgacttaccggga
gacctaaggaaatgctgctatggatactgcattgacttgttggagaaactggcagaggac
atgggatttacctttgacctttatattgtgggagatggaaagtatggtgcgttaagtggg
acgggacgctggaccggccttgtgggggacctcctgaatggaacagctgacatggcggtc
acttctttctccattaactctgccagaagcagagttatagatttcacctctcccttttac
tccaccagtctgggaattctggttcgtagccgggacacggcagcgcctatcggtgccttc
atgtggccgctccactggtccatgtgggtgggcatttttgtcacgttgcacctcacagca
ctcttcctcaccttgtatgagtggaacagcccatttggcatgactccccatggcaggaac
aggctgcgtgtgttctcctactcatctgccctcaatctctgctacgcaatactctttgga
cgcactgttgccaccaagactcctaaatgttggacgggacgtttcttgatgaacctttgg
gctattttctgcttactggtgctgtccagctatacggccaatcttgctgctgtgatggtt
ggagagaaaacattcgaacaggtttcagggattcacgacgacaagctgcaccatccctct
ctgggtttccgttttggcaccgtaagggagagcagtgctgaggattacatgaagaagagt
ttccctgaaatgcacgactacatgagacgctttaaccagcccacaaccccagagggtgtg
cacatgttgaagacagatcctccagccctggatgcattcatcatggataaagccctgctt
gactttgaggtctccatcgatgcggactgcaagctgctcacagtggggaagccttttgct
atagaaggctatggcataggccttccccagggctctcctctgacccgtaatgtgtcagag
tttgtgagtcgctacaagtctgacggctttatggacatgctgcatgataaatggtataag
gttgtaccctgcggaaagagagtctttgcagtcaccgagactctacagatggggatccag
catttttcaggtctgtttgtgttgctgtgcatgggagtcgggggagctctgctgaccttg
gcaggtgaacacaccttctatcacctggtggtcccccgcctccgacgctcaaacaccctg
cagtactggctgcacaccagccaggtggaaaactgcaccttacacaggaagcagcagcag
caacctccaccgtcacctcccacatccctccctgcttccacaacagctggtgaaactgga
agctcctctccatcccatgaacataaagagaaacgtgttcactttgacctggacacgcta
cacagctaccgcctgcgcacacacacagcatcggtgcgtggcaggccaggcatggtcggc
cgccctggtcttggtcttggagggtttgggttcggcagctttacctctcctcctcagatt
aatctccacgccaatggaggtccagtatcgaccctagcttcgacaggtttgctgctttct
cccctaggaaacagggctacccagacaagcctgtgggagggggaactccaggagcttcaa
gtgaagatcgaaaccttccgcaaccagctcagagaagctctggctcgaagagctgagatc
cagaccagcttggaaagagaaaggagtggactggggcgcagggaaaccagcctggaaaga
gaaagagacaggcagaaggtacagactattcctacagacagaagtagttctactcagtcc
agacttcctgaaagagacaggaccagtcaactgcaaaccctgaacaatcagcagctaggg
aggcctaaccaaacagctgcagctgctactgctggactgggaagaagcagccagttaaac
actgtgaacagtttggagagaggaagagccactcaatcacgccccagtgttactgtgaca
ggagaaaggactgtccagtcacgcacttctactagtttggagcgaagtcaagtcaaccaa
caaggtgctggaaacataactgtccaaacgaggaacacttctagccttgacagacagaag
gccaacctttcacgcactctgaacactttggagaggacaaaagccaaccagtcaagtgta
aacaccggaacctga
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