Cyprinodon variegatus (sheepshead minnow): 107099161
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Entry
107099161 CDS
T06110
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2B-like isoform X1
KO
K05210
glutamate receptor ionotropic, NMDA 2B
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04020
Calcium signaling pathway
cvg04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
107099161
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
107099161
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107099161
Ion channels [BR:
cvg04040
]
Ligand-gated channels
Glutamate (ionotropic)
107099161
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
107099161
NCBI-ProteinID:
XP_015252663
LinkDB
All DBs
Position
Unknown
AA seq
1420 aa
AA seq
DB search
MLVSLHPSPSHLQDKCLVSPSSIQHSPSCSDQLYHHTRPQFRLNLRFLSLALSLLLLSIL
LPVCESRRGGGPGSGPGSSSGGQGGQRGGGNQRGVVIPPHYSPGSPALPPISPKLISSLS
IAVILVGNSSEVTLGAGLEKEDFLHIPYPPKVEVVTMNETDPKSIINRICAQMTRNSLQG
VVFGDDTDQEAIAQILDFISAQTHIPILGIRGGSSMVMAAKDDHSMFFQFGPSIEQQASV
MLNIMEEYDWYIFSIVTTYYPGYQDFINKVRSTIENSFVGWELEEVILLDMSVDDGDSKI
QNQMKKLQSPVILLYCTKEEATTIFEVAHSVGLTGYGYTWIVPSLVAGDADHVPSVFPIG
LISVSYDEWDYNIEARVRDAVAVIATATSTMMLDRGPHTLLKSSCLGTPDKKGSSTVHSK
EILKYVMNVTFEGRNLSFSEKGHQMFPKLVIILLDKDRQWDRVGKWERGSLTMRYHVWPR
FELYSDVEEREDHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQLKLTNHTGDSGIY
IKRCCKGFCIDILKKIAKTVKFTYDLYLVTNGKHGKKVNGTWNGMVGEVVAKNAHMAVGS
LTINEERSEVIDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAV
AVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMV
SVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQKPNEFSPPFRFGTVPNGSTE
RNIRNNYRDMHAYMTSFHQKNVDEALYSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIG
SGKVFASTGYGIAIQKDSGWKRAVDLAILMLFGDGDMEEFEALWLTGICHNEKNEVMSSQ
LDVDNMAGVFYMLGAAMILSLLTFICEHLFYWQLRFCFMGVCSGKPGFTFSISRGIYSCI
HGVQIEENKSTIDSPSSTIKKNMNNTHSNILRLLRTAKDMTAVPGVNGSPHAALEYSHSS
REAAIYDIQKHRHSLVGHPSDCKSATPYPPEDPMFSDYISEVERTFGNLPLKDSNLYQDH
YRHHHPASALGMSGPPPNRPRSLGSASSLEGGMFDGDSLGGGVAPIFTTQPRPSMTHRNT
SKFDLIAGHAAADANQGGFKGSNVYGRFSFKGGASSTGLIGGHDRYCGGGGGGSGGDDGN
IRSDASDISTHTVTYGNLEGSTKRRKQYRDSLKKRPASAKVRREQDEIELNAFRKRPHHH
TVHHHFPHGPLAHRPVSPPVERKRGGGTDKVNQNPFIPTFGDDQCLLHGAKPYYVKKPQT
PQQQQQLLNNSRGGGEFRSSMGATSYLPASATAGVMSNVAPRYPKELCLGGVGGPMGNHH
GANKLLPGGRDTLGLGQGQRPFNGANGHVYEKLSSIESDV
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtcagcctccacccttctccctcccatcttcaggacaagtgtttggtgtctccc
tcctcaattcaacactctccttcttgttcagaccagttgtaccatcatactcgcccccag
ttccgcctcaacctgcgatttctctctttggccttatctctcctcctcctctccatactc
ttgcccgtctgcgagtcccggagaggtgggggtccaggttccgggcctggaagttcctca
ggtggacaaggaggtcagagaggaggcggaaaccagaggggggttgttatccctcctcat
tactctccggggtcaccagcacttcctcctatcagcccaaaactgatcagctctctcagt
attgccgtcatactggtgggcaactccagtgaagtaaccctgggtgcaggacttgaaaaa
gaggatttcctccacattccgtatccccctaaagttgaggtcgtcaccatgaatgagacg
gacccaaagagcatcatcaatcggatctgtgcacagatgacgaggaactcgctacaaggc
gtagtgttcggtgatgacacggatcaggaggccattgctcagatcctggatttcatctct
gctcagacacacattcccatccttgggatcagaggggggtcctccatggtcatggctgcc
aaggacgaccactcgatgtttttccagtttggcccctccatcgagcagcaggcgtccgtc
atgttaaacatcatggaggagtatgactggtacatcttctctatcgtcaccacatactac
cccggctaccaggactttatcaacaaggtccgcagcaccattgagaacagctttgtgggt
tgggagctagaagaagtcatcctgctggacatgtcagtggacgatggcgattcaaaaata
cagaatcagatgaagaaactgcagagtcctgtcatcctgctatactgcaccaaggaagag
gcaaccactatttttgaagtggcccactctgtcgggctgacaggttatggctacacctgg
attgtaccttcactggtggccggtgatgcagaccatgttccatctgtcttccctataggg
ctcatctctgtgtcatatgacgaatgggactacaacatcgaggccagggtacgtgacgca
gtggctgtcattgccacggcaacctcgaccatgatgttggaccgagggccacacaccctg
ctgaagtccagctgcctcgggacacctgacaaaaagggatccagcactgtccactccaag
gaaatcttgaagtatgtcatgaatgtgacatttgaaggtcgaaacctgtcatttagcgaa
aaaggccaccagatgtttcccaagctggtcataatacttctcgacaaggacaggcaatgg
gacagggttggcaagtgggaaagaggctcgttgacgatgaggtaccatgtgtggcctcga
tttgagttgtactctgatgtggaggagcgggaggaccacctgtccatcgtgactcttgaa
gaggcgccttttgtcatcgtggaggacgtggatccactcagtggaacctgcatgaggaac
actgtaccgtgtcgcaaacagctaaaactcaccaatcacacaggcgattcaggaatttac
atcaagcgctgctgcaaaggtttctgtatcgacatcctgaaaaagattgcaaaaactgtc
aagttcacttatgacctgtatctggtgaccaacggcaaacacggaaagaaggttaacggg
acctggaacggcatggttggagaggtggtggcaaagaacgctcacatggctgtgggatca
ctcaccatcaacgaagagaggtcagaggtcatcgacttctccgtgccgttcattgagacg
ggtatcagtgtcatggtctcccgcagcaatggcaccgtttccccctctgcctttctagag
cccttcagcgctgatgtctgggtcatgatgtttgtgatgctgctgatcgtgtcggccgtg
gccgtctttgtgttcgagtacttcagccctgtgggttacaatcgctgtctggcagatgga
cgagagcctggaggtccctccttcaccatcggcaaggccatctggctgctgtggggcctg
gttttcaacaactctgttcctgtgcagaatcctaaaggcaccaccagtaagatcatggtg
tcagtgtgggccttcttcgctgtcatctttctggcctcctacactgccaacctggcagcc
ttcatgatccaggaggagtatgtggaccaggtgtcgggcttgtcagacaaaaagttccag
aagccgaacgagttctcgccacctttccggtttggtacggtgcccaacgggagcacggag
cgcaacatccgcaacaactacagagacatgcacgcctacatgaccagcttccaccagaag
aatgtagatgaggccctgtacagcctgaagactgggaaattggatgcattcatctacgac
gctgcagtgctgaactacatggctggcagggatgagggctgtaagctggtaaccatcggg
agtggcaaagtgttcgcctccactggctacggcatcgccatccagaaggactctggctgg
aaacgtgctgtggatttggctatcctgatgctgtttggagatggtgacatggaggagttc
gaggccctgtggctgacaggaatctgtcacaacgagaagaacgaggtgatgagcagccag
ctggacgtggacaacatggctggggtcttctacatgctcggggctgccatgattctgtca
ctactcaccttcatctgtgaacatttgttctactggcagctgcgtttctgcttcatgggc
gtgtgttcagggaagcccgggttcacattctccatcagcagaggtatctacagctgcatc
catggggtacaaattgaggaaaacaagtcaaccatagactcaccctcttccaccataaag
aagaacatgaacaacacccactccaacatcctacggttactccgaactgctaaagacatg
actgcagtcccaggtgtcaatggctctccacatgcagctctagagtatagccatagcagt
cgtgaagcggccatctatgatatccagaagcaccggcacagcctggtgggtcacccatct
gactgtaagtctgctacaccttaccctccagaggaccccatgttcagtgactacatcagc
gaggtggagaggacttttggcaacttgcccctgaaggacagcaacctgtaccaggaccat
taccggcaccaccacccggcctcggctctgggtatgtccggccccccacccaataggccg
cgtagcttaggcagcgctagctcattggaagggggcatgttcgatggtgacagtttgggg
ggaggtgtagcacccatttttaccacacagccccgtccctccatgactcacaggaataca
agtaaatttgacctgattgcaggccacgccgctgcggatgccaatcagggtgggttcaaa
ggaagcaatgtttacggcaggttttctttcaaaggaggagcatccagcacagggctcatc
gggggacatgacaggtactgtggtgggggtgggggaggctcagggggtgacgacgggaac
attcgctccgacgcctcggatatctccacccacactgttacctatggaaacctggaggga
agcaccaagaggcgtaagcagtacagggacagcctgaaaaagaggccagcctctgcaaag
gtcagacgggagcaggacgagatagagctgaatgccttcaggaagagaccccaccaccac
accgtccaccaccacttccctcatgggcctctggcacaccgcccggtctcacctcccgtg
gagcggaagaggggaggaggaacggataaggtgaaccagaaccccttcatcccaaccttc
ggtgacgaccagtgtctattacacggtgccaaaccgtactacgtcaaaaagccacagacg
ccgcagcaacagcagcaacttctcaacaacagccgaggaggaggggaattccgcagctcc
atgggagcaacttcctatttgcccgcatctgccacagctggggtgatgtccaatgtggcc
ccaagataccccaaagagctgtgcctgggtggggtgggagggcccatggggaaccaccac
ggggccaacaaactgctgcccggaggcagggacacgttaggtctgggacagggacagaga
cccttcaatggtgccaacggacatgtctatgaaaagctctcgagcattgagtcagatgtc
taa
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