Cyprinodon variegatus (sheepshead minnow): 107104109
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Entry
107104109 CDS
T06110
Symbol
ciita
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cvg01001
]
107104109 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cvg04054
]
107104109 (ciita)
Enzymes [BR:
cvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
107104109 (ciita)
Protein kinases [BR:
cvg01001
]
Serine/threonine kinases: Other
TAF1 family
107104109 (ciita)
Pattern recognition receptors [BR:
cvg04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
107104109 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_8
nSTAND3
AAA_16
RsgA_GTPase
AAA_22
PUB_1
DUF815
TsaE
Motif
Other DBs
NCBI-GeneID:
107104109
NCBI-ProteinID:
XP_015259511
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MQEFDQDSLGLPDILPDDLSNFLDDDYLVTHLDPAMLFNMDLGVDCVDEIILNSEASMAM
EAPPLANHKEQGRQSKTKTKPKRKRQRDVMSKQCNSNSRVKRQKAIDSPQPQEATAEPSL
IHGTDAEAVPVPAEPIGGLSTPQPGIFHVFRPQSANSIPFQFIPFQDSSAYKVVQLSSSP
PPIIRLPLPNSAAMPTYIFVPAPSPPCKRQLPPLSPVDGTVAPVLVSSFQPGSKSDKACK
AMSPTTAPSPSPTNDLSPCKEPPKSPTVVEIPQTVKDYIQQSKTHMSQKCLDMEAGLQLT
THYVDVSVSQREIVRAGKNTNRCLDKELIITGDIDRQKSSVGQSQIFDSLNGKRYNLLFG
NAGMGKTTLIKKLCLDWSKDLIPQFDFVFLLDGKQLNLTEPVHSLQTLLLNQSSFAPPCT
DPEGVYAQILSAPKRVLVVFDGFDELRDYEMLLQTQEKELVAALQKDSKAQAFTVKQLFS
GILQRVLLPGCTLLLATRPRGTANQLLRRADSFLEVCGFTPENVETYVSQYFSDTELRAS
ALDLLKSCSYLKLLCWNPALCHLVCTVLEHGKGSEALPRTLTALCHEVLSLKLEKVRGST
ESPAEPEKQNNAAHVEEPLSEISNSSQGRRGERKKHTRTRGVTHNASRSQRARRRKGQEK
NDEENVCKDTNSSQGGELLSQLSSLAWEGIKSNSTTVPRGRGVSHKVREFGLRTGLLLSQ
SLTTRTTFQTESVGGGGGGDNSGMEKVQDEESKSKEGKTFDVDEDSLLLWANPFLQSYMA
AVHLSLSRTVTDRTFVQTLPFHTGGKGRRKPQREELELTQRFAVGLLFHNRTELKRLHSC
SDIIFRDMVPSKQALVMKHLEGLSFGDLSSAQILEVCNYVYEASFTHKDSGTDAGGKVLD
HLAAHLPEFVTFRGVPLNPPDVFTVQSILSKAGAEGRGFRLDLEDSGIKICGLKSLVGLS
NINTYRACIADVITLWEELETDAEEALLQGAVSKFKIHPLKATQVCHIEHLEKLVSIHTR
RRLSDSSNQSVSVLAEGVPAVKELYKLEFELGPENGPLALPKLWDLLPGLHNLQHLDLEN
SKIGDKGAEKLANALVSLHSLEILNLSENCIGDQGLKKLAVVLKDLPKLHCLSLYSNVIS
DEGAESLAAVLPHMASLTELDVKYNKMTDVGAQSLGASLKNCEKVKTLRMWNQCIPYGVF
ERLQQQDSRILWH
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaatttgaccaggactccttgggcctgcctgatatccttcctgatgatctctca
aactttttggacgatgactacttagttactcacctggatccagccatgctcttcaatatg
gatcttggtgttgactgcgtggatgaaatcatcctcaacagtgaggcgtctatggcgatg
gaggccccccctcttgctaaccacaaagagcagggaagacagagcaagacaaaaactaaa
cctaaaaggaaaagacagagagatgtcatgtctaaacagtgcaacagcaactccagagtg
aaaaggcaaaaagcaatagattcacctcaaccccaagaggcaactgctgagccatctctc
attcatggtaccgatgctgaagcagtaccagttccagcagagcctataggaggcctctcc
accccccagccaggaattttccacgtgtttcgcccccagtcagccaattccatcccattt
caattcatcccattccaagattcatctgcttataaggtggtccagctgtcctcctctcct
cctccaatcattagactcccactccccaattcagctgctatgcccacatacatctttgtt
ccagcaccttctccgccctgcaaacgccaacttccacccctctccccagttgatggaaca
gtggcacctgttctggtgagttcatttcagccaggatccaagtcagataaggcatgcaaa
gccatgtcccccactactgcaccatctccatcacccacgaacgatttgtccccttgtaag
gagccacctaagtctcccacagttgttgaaatcccccagactgtgaaagactatatccag
caatctaaaacacacatgagtcaaaaatgcctggatatggaggcaggcctacagctgaca
acccattatgtggatgtgagtgtgagccagagagagattgttcgcgctgggaaaaacaca
aacaggtgtctggataaggagctcatcatcactggagatatagatcgtcaaaaaagctca
gtggggcaaagtcagatctttgacagcctaaacggtaaacgttacaatttgctattcggc
aatgctggcatggggaaaacaactctgattaagaagctgtgtttggactggtccaaagac
ttgatccctcagttcgactttgtctttttactagacggcaaacagctgaatttaacagag
cctgtccacagtctccagacgctgctgcttaaccagtcctccttcgctcccccctgcact
gaccccgaaggagtgtacgctcagatcctctcagctcctaaacgggttcttgttgttttt
gatgggtttgatgagctgcgggactatgaaatgctgctgcagacgcaagagaaggaattg
gtagctgcgctgcaaaaagacagtaaggctcaggcctttacggtgaagcagctgttctca
ggaatccttcagagggtcctgctcccgggatgcacgctcctcctcgccacccgcccaaga
ggcacagccaaccagctgctacggcgcgcagacagctttctggaagtctgtgggttcact
ccagaaaatgtggagacgtacgtgtctcagtacttctctgatactgaacttcgagcgtct
gctttggacctcttaaaaagctgcagctacttgaagctcctctgctggaaccctgcactc
tgccatttagtgtgcactgttttagagcatggcaaaggttcagaggccttaccgagaact
ttaactgcactctgtcatgaggtgctcagtttgaaattggaaaaagtcagaggaagcaca
gagtcgcctgctgagccagagaaacaaaataatgctgcacatgtagaggaacctctgagt
gaaatctcaaacagttctcagggaaggaggggggagaggaaaaaacacactagaacccga
ggtgtaacgcacaatgcttcacggagtcaaagagcgaggaggaggaaaggacaggagaaa
aatgatgaggagaatgtttgcaaggacactaacagctcacagggaggagaattgttgtct
cagctaagctctctagcttgggaggggatcaaatcgaactcgaccacagttccaagggga
cggggtgtttcccacaaagtcagagagtttggcttgaggacaggtctgctgctttctcag
tccctaacgacaaggacaactttccaaacagagagcgtcgggggaggtgggggaggagat
aacagtgggatggaaaaagtacaggatgaagagagcaaaagcaaagaaggaaagaccttt
gatgtggatgaagacagcctcctgttgtgggccaatccctttcttcagagttacatggct
gctgtccatctgtctttgtcaaggactgtgacagaccgcacctttgtccagaccctgcct
ttccatacagggggaaaaggcagacggaaacctcagagggaggagctagagctcacccag
cgcttcgcagtgggcctccttttccacaacaggacagagctcaagaggcttcattcatgc
tctgacattatattcagggacatggttcccagcaaacaggctttggtgatgaaacaccta
gaaggtctatccttcggggacctgagttcagctcagatcctggaggtttgcaactatgtc
tatgaagcaagtttcacacacaaagacagtggcacggacgctggtgggaaagtcctggat
catctagctgcacatcttcctgaatttgttacatttcggggtgttcccctgaatccgccc
gatgtgtttacagtacagagcatcctcagcaaggccggagctgagggcaggggttttcgt
ttggatctggaggactctgggataaagatctgtggacttaaatctttggtgggcctcagc
aacatcaatacatacagggcttgcatagcagacgtcatcaccctctgggaggagctagag
acggatgctgaggaagctctcctgcaaggagctgtgtccaaattcaagatccatccactg
aaagccacacaagtctgccatatagagcatctagagaagcttgtcagcatccatacccgc
aggaggctctcagacagctccaaccagtcagtttccgtcctggcagagggggtaccagct
gttaaagagctatacaagcttgaatttgagcttggcccagaaaatggacccttagctctt
cctaagctgtgggaccttcttcctggtctacataaccttcagcacttggatttggaaaac
agtaagattggagacaaaggagcagagaaactggcaaatgcattagtctcgcttcactct
ctggagatactaaatttgtccgagaactgcatcggagaccaaggcttgaagaaactagcc
gtcgttttgaaggacctgcccaaactgcactgtttaagtctctacagtaatgtgatttct
gatgaaggggcagagagtttagcagctgtcctcccacacatggcttctctcacagaactt
gacgtgaaatataacaagatgacagatgttggagcacaaagcttgggagccagtttgaaa
aactgtgaaaaagttaaaactttaaggatgtggaaccagtgcattccatatggagttttt
gagagacttcagcagcaggacagccgcatcctctggcactaa
DBGET
integrated database retrieval system
