KEGG   Crassostrea virginica (eastern oyster): 111125562
Entry
111125562         CDS       T09197                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03030  DNA replication
cvn03410  Base excision repair
cvn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111125562
   03410 Base excision repair
    111125562
   03420 Nucleotide excision repair
    111125562
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cvn03032]
    111125562
   03400 DNA repair and recombination proteins [BR:cvn03400]
    111125562
Enzymes [BR:cvn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     111125562
DNA replication proteins [BR:cvn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    111125562
DNA repair and recombination proteins [BR:cvn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      111125562
SSDB
Motif
Pfam: DUF1744 DNA_pol_B_exo1 DNA_pol_B DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 111125562
NCBI-ProteinID: XP_022325209
EnsemblRapid: LOC111125562
UniProt: A0A8B8DCE7
LinkDB
Position
3:complement(56739482..56763496)
AA seq 2269 aa
MVLQNSGRYKADNDPDNSAREDGSDRRLQRALAGDAVDSKFGFERYKETKERTGWLINMH
PADILDENKQLISAVDYYFLEEDGSRFKATLPFKPYFFVATKPGCEREVASFLTKKFSGK
LATVETVYKEDLDLPNHLIGLKRQYLKLSFSSVEDLTKVRREIHPAVRKNKEREQSSEAY
MTLLSNHLLGADLDNSENKATNQLDNVIDIREYDVPYHVRXSIDLKIFVGHWYSVRGRGS
LPVEIRHREDLVDRPDPVVLAFDIETTKLPLKFPDSQTDQIIMISYMIDGQGFLICNREI
VSQDVEDFEYTPRPEFEGPFTVFNEPDEESLLRRFFDHILEVKPQIFVTYNGDSFDWPFV
ETRAAMHNLDMSLEIGFXKDNQGEYKARPAVHMDCFRWVKRDSYLPVGSQNLKAVAKAKL
RYNPVELDPEEMCRMASEEPQVLANYSVSDAVATYYLYMKYVHPFIFALCTIIPMEPDEV
LRKGSGTLCEALLMVQAYHANIVFPNKQEAVWNKLTDDGHVLDSETYVXWSCGALESGVF
RADIPCRFRMVPEAFQNLIDKVEKTMXHAIEVEEKIPLEEVTNFDEVCADIIESLSMLRD
CPNRLENPIIYHLDVGAMYPNIILTNRLQPPAIVDESTCAACDFNKPGATCQRRMPWMWR
GEYMPASRNEFHRIQQQLENEKFPPFQPGGPPRAFHQLTKEEQAAAEKKRLTDYCRKAYK
KVHSTRMEQRTATICQRENSFYVDTVRAFRDRRYEFKGLNKVWGKKLAEAKKSGDAAEIK
KANGMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGANIITKAREIVEQ
IGRPLELDTDGIWCVLPATFPENYVVKTTNAKKPKVTVSYPGAMLNIMVQDFFTNDQYQE
LEDARTLKYSVRKENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNFDGSLAELKGFE
VKRRGELELIKIFQSSVFEAFLKGSTLDECYAAVAKVADYWLDVLFSKAANMPDSELFEL
IAEKRNMSRTLADYGEQKSTSISTAKRLAEFLGDQMVKDAGLNCHYVISKKPEGAPVTER
AIPLAIFQAEPSITKHYLRKWLKSPSLSDFGIREILDWEYYIERLGGCVQKIITIPAALQ
QVANPVPRVPHPTWLHKKLMERNDVFKQKKISEIFAPTQRKKTEEISSERELFSQEESTP
SVADLEDMMTFKKPTNGVALSHKRKRDRSSIGDTEASQDSQGSQTWREILGTPPPMGTTK
EERKVWLEYHKKKWQLQARDRTERKRRRVEFGDVPTGTYLGGNRSGLSGFLRRTARSIMD
MPWQIVQLMETGHPGQYRLWALIGNDLHAMKVNVPRIFYVNQRTPKEGEGAMWKKVVKTL
PRSHPVMFLYEYSVPEDVYQQHINEISADLSSPDIEGVYETQVPLLFRALYRLGCITTVN
RDFAKYMQGRETDTFELDHLNFRTLAQFSYLEPGTIKHVYLYHHVCGNKMVFGLFFPMSK
RAMVYIVDTVRSDQMPTLTALYNAERNSKLAKVDEADLPPSNHTFEYKLEKDVRQVYRSI
QRSLSAYKDEKKGPTYIAIQSPQDFQHLTSSMPGLNDFPLVPIHITDSDRLYSVLDWQRV
GCRRMIQHYLNVQIILQSMTEQCRYLHIPLGNLPKDITMFGCDLFFARHLQKNNHVLWCS
STERPDLGGKEADDNRLCMELEESTSVDVNNPGTFPTVCVELCISSLAVNTVIESGHVND
QEGASAVSFDTLPQSSLEEMVQGQGAATYLASYDETALCSTSFRILKTMVHGWVRDVTLY
NNIFADNQIIHFYRWLRSSNALLYDPALRRTLINMMKKVFLQLISEFKRLGSNVVYGNFN
RLILCTKKRRLVDALGYVEYITNSIKSRDLFKLVEMSYEQCWEYLIWMDPANYGGVKGRL
PSESPLEQTQPDPEETGHDSEEEGVEEEEREEEREVLNQSEEEEGPEIEMNWNIMHFLPE
AGACQTNFKKIVGWFIMDVYKQHLEEQKSLTPGNTPVKRRHNSQSQRAVEHTTTTPQSVS
FTQELVAGELSQQMFLITQKIHKKYGQITDRSGQFPNRPGSHLSLQNPALEFIKCVCKVL
SLDSSINLQVMKLKRDLLKLIGIGEFAEEAAFTDPCLSYVLPEVICKSCNHIRDLDLCRD
PYLSQDSAVPSWTCVQCQAPYDMEEIENTLLDAVHRKSMAFILQDLKCVKCNGVKENNMR
KYCRCAGDFTNTVSATDLSKTLTTFSGIARHYNMDLLKETVEWILKMNR
NT seq 6810 nt   +upstreamnt  +downstreamnt
atggttttgcagaacagtgggagatataaagcggataatgatccggacaattcagcgcga
gaagatggatctgacaggcgtctacaacgggccctggccggtgatgctgttgacagcaag
tttggttttgagaggtacaaagaaacaaaggagaggactggttggctgatcaacatgcat
ccagcagacattttggatgagaataagcagttgataagtgctgtagattattactttcta
gaagaagatggatctcggtttaaggctacattgccattcaaaccatacttttttgtggca
actaagcctggatgtgagagagaggtggcatcttttttgaccaaaaaattctcggggaaa
ctagcaacagttgaaacagtctacaaagaagatttagatttgccaaatcatttaattggg
ttgaagagacagtatctgaagctttcattttcgtctgtggaagaccttacaaaagtgaga
cgagaaatacatccagcagttcgcaagaataaggagagagaacagtccagtgaagcttac
atgacactgctgagcaatcatcttcttggggcagatttggacaactctgaaaacaaagca
acgaatcagttggataatgttattgacataagggaatatgatgttccctaccatgtgcgc
ngttccatcgacctgaagatctttgtgggtcactggtactcggtgagggggcggggatct
ctcccagtagaaatacgtcacagagaggatctagtcgacaggccggatccagtggtttta
gcatttgacatagaaacaacaaaattacctctgaaatttcctgactctcagactgatcag
ataatcatgatatcttacatgatagacggccagggattcctgatttgcaacagagagatt
gtttcccaggatgtggaggattttgagtatactcctcgtccagagttcgagggaccattt
acagtgtttaatgaaccagatgaggagagtctgctgaggcgattctttgaccacatacta
gaagtgaagccccagatatttgtaacttataatggagacagctttgattggccatttgtg
gaaactcgagctgctatgcataaccttgacatgtccttggagataggcttcncaaaggat
aatcagggagaatacaaggcaaggcctgcagtccacatggactgcttcagatgggtaaaa
agagacagttatttgcctgttggaagtcagaatctgaaggcagtggcaaaggccaagtta
agatacaatcctgttgaattggacccagaggagatgtgtaggatggctagtgaagaacct
caggtgcttgctaattactctgtgtctgatgcagtagctacatactatctgtacatgaag
tatgttcacccctttatatttgctctctgtacgattattcctatggagcctgatgaggtt
ttgaggaaaggttcggggacgctctgtgaggcattacttatggtccaagcctatcatgcc
aacattgtgttccccaacaaacaggaggcggtctggaataagctgacggatgacggacat
gtcttagactcagagacgtacgtgnngtggtcatgtggagcacttgagtctggagtgttc
agagcagacataccttgtagatttagaatggtacccgaggcattccagaatctgatcgac
aaagtggagaagacaatgnaacatgccatcgaggtggaagagaagatccctttggaggag
gtgacaaactttgacgaggtgtgcgcagatatcatcgagagtctctccatgttgagggac
tgtcccaacaggctagagaaccccattatttatcacttggatgtcggtgctatgtatccc
aacatcatcctgactaaccgactacagccccctgcaattgtggatgagagtacctgtgct
gcctgtgatttcaataaaccaggtgccacttgtcagaggagaatgccctggatgtggaga
ggggaatacatgcctgcctcccgcaacgagttccacagaattcagcagcagttggaaaat
gaaaagttccctccttttcagcctgggggtcccccacgagcttttcaccaactgaccaaa
gaggagcaggcggctgctgagaagaagagactaacagattattgtagaaaagcttacaag
aaagttcactccacacgcatggaacagcgaacagccaccatctgccagcgagaaaactct
ttctacgttgacactgttcgagctttcagagatcgtagatatgaattcaagggtttaaac
aaagtatggggtaagaagctagccgaggccaagaaatcaggggatgctgcagagattaag
aaagcgaatggtatggtggttttatatgactctctacagctggcccacaagtgtatcctc
aactcgttctatggatacgtcatgcgaaaaggggcccgctggtacagcatggagatggct
gggatagtgtgctatacaggggccaacatcatcacaaaggccagggaaattgtcgaacaa
atcgggcgccccttagagttagacacggatggtatttggtgtgtgctgcctgctaccttc
cccgagaattatgtggtcaagacaactaatgccaaaaaacccaaagtgacggtgtcgtat
cccggagccatgctcaacatcatggtccaggactttttcaccaatgaccaataccaggag
ttggaggatgccaggacgctgaagtattctgtacgcaaggagaactccatcttctttgaa
gtggatggcccttaccttgccatgatacttcctgcttctaaggaggaaggaaagaaactg
aagaagagatatgctgtattcaacttcgatggctctcttgcagaacttaagggtttcgag
gtgaagcggcgtggggaactcgaactgatcaagatcttccagtcctccgtgtttgaggcc
ttcttgaaaggctcaaccctggatgagtgctacgccgcagtggctaaagtcgctgactat
tggctggatgtgctgtttagcaaggcagcaaacatgccagattcagaactgtttgaactg
attgctgagaagcgcaacatgtcccgaaccttagcagactatggagaacagaagtcaaca
tcaataagtacagcaaaacgtttggcagagttccttggagaccagatggtaaaggatgca
ggtttaaactgccattatgtgatctccaagaaaccagagggggcacctgtcactgagagg
gccattcctctggccatcttccaggccgagcccagcatcaccaagcactatctccgcaag
tggctcaagagtcccagtctgtctgactttggtatccgtgagatactggattgggaatac
tacatagagagattgggtggctgtgttcagaaaattatcactatcccagcagcccttcag
caggtggccaacccagtacctagagtgccacatccaacatggctccacaagaagttaatg
gagaggaatgatgtgttcaaacagaagaagatcagtgagatctttgctcctacacagagg
aagaagacagaggagatttcctcggagagggagttgttttctcaggaggagtcaactccc
agtgtggctgacctggaggacatgatgacctttaagaagccgaccaatggggttgctctc
agccacaaaaggaagcgggaccggtccagtatcggggatacggaggccagtcaggactcc
cagggctctcagacttggagggaaatcctaggcacgccccctccaatgggaaccacaaag
gaagaaagaaaggtttggctggagtatcacaagaagaagtggcagctgcaggccagagat
aggaccgagagaaagagaaggagggtggagtttggggacgtcccgaccggaacttacctg
ggaggaaatcgcagcggtctcagtggattcctcaggcggactgcccggagcatcatggac
atgccatggcaaatagtgcagctgatggagactgggcatccaggacagtatagactttgg
gctctgattggaaatgaccttcatgccatgaaggtcaatgtaccgcgaatcttctatgtc
aatcaaaggaccccaaaggagggggagggggccatgtggaagaaggtggtgaagaccttg
cctcggtcacatccagttatgttcctgtatgagtactctgtaccggaagacgtttaccaa
caacacatcaatgaaatcagtgctgacctgtcctcccccgacattgagggagtgtatgaa
acccaggtccccctactgtttcgagccttatacaggctgggctgtatcaccactgtcaat
agagactttgccaagtacatgcagggaagggagactgacacctttgagcttgatcacctg
aattttagaactttggctcagttttcttacctggagccaggcaccattaaacatgtgtac
ttgtatcatcatgtgtgtggaaataagatggtgtttgggcttttcttcccgatgtcaaag
cgtgccatggtgtacattgtggacacagtgaggagtgatcagatgcccacactgactgcg
ctttacaacgctgagagaaactccaagctggccaaggtggatgaagcagaccttccccct
tccaaccacacatttgagtacaaactggagaaagatgtgcgtcaggtgtacaggtccatc
cagagatcactctctgcttacaaggatgagaaaaaaggacccacatacatagccatccag
tcccctcaagattttcagcatctgacatcgtctatgcctgggcttaatgactttcctctg
gttccaatccacattacagatagtgatcgattgtacagtgtacttgactggcaaagagtt
ggatgtagacgcatgatacaacattatctgaatgtccagatcattctgcagtctatgacc
gagcagtgtcgctacctgcacattcccctcggaaacctccccaaagacatcaccatgttt
ggctgtgacttgttctttgcgcgacatctgcagaagaacaaccatgtgctgtggtgttcg
tccacagagagaccagatctggggggcaaggaagcagatgacaacaggctgtgcatggaa
ttggaggagagtactagtgtagatgtaaacaacccagggacttttcccacggtctgtgtg
gagctgtgcatttccagtctggctgtcaacaccgtcatagagtctggccatgtgaatgac
caggagggggccagtgcggtgagttttgacacactgcctcagtcctccctagaggagatg
gttcagggtcaaggtgcagccacttacctggccagctatgatgaaacagctctctgctca
accagtttcaggatactaaaaactatggtgcatggatgggtgagagatgtaacactctac
aacaacatatttgctgataaccaaatcattcacttctacaggtggctgcgttcctctaat
gctttactgtatgaccctgctctacgacgaactctcatcaacatgatgaagaaggtcttc
cttcagctgatatctgagtttaaaaggcttggatccaatgtggtttacgggaactttaac
cgtttgatattgtgcacaaagaagcgccgattagtggatgccctcggttatgtggagtac
atcactaacagcatcaaatcgcgggatctatttaagctagtggagatgtcttatgagcaa
tgttgggaatatctcatctggatggacccagcaaattacgggggtgtaaaggggaggctg
ccatcagagtcccctttggagcagacccagcctgaccctgaggaaactgggcatgacagc
gaggaggagggggttgaggaagaggagagagaagaggaaagggaagtcctgaaccagtca
gaggaggaggaggggcctgagattgagatgaattggaacataatgcacttccttccagaa
gcaggggcttgccagacaaattttaaaaagatagtgggatggttcatcatggatgtgtac
aaacaacatcttgaagagcagaagtccttgacacctgggaacacgccagtgaaacgtcgt
cacaacagccaaagtcagagagcggtggaacacactaccaccaccccccagtccgtgagc
ttcacacaggagcttgtggctggggaactgtctcagcaaatgtttctaatcactcagaaa
attcacaagaagtacggccagatcactgaccggtcgggtcagtttcccaaccgcccaggc
tctcacctgtcactgcaaaacccagcactagagttcatcaagtgtgtgtgtaaggttctg
tcccttgacagcagcattaatcttcaagtgatgaagttgaagcgtgaccttcttaagctg
attggaattggagagtttgctgaggaggctgcgtttacagacccctgtctctcttatgtc
ttaccagaggtcatatgtaaatcttgtaaccatatccgggaccttgacctgtgtcgtgac
ccctacctaagccaggactcagcagtaccctcctggacctgtgtacagtgtcaggccccc
tatgacatggaggaaatagaaaatacactcctggatgctgtccacaggaagtccatggcc
ttcatcctacaggaccttaaatgtgtcaaatgtaatggggtgaaggagaacaatatgcgg
aagtactgccgctgtgctggagattttacaaacaccgtgtcggccacagatctgtccaaa
actctgaccacatttagtggaatagccaggcactataatatggatttgttaaaagaaact
gtggagtggattttgaaaatgaatcgatga

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