KEGG   Crassostrea virginica (eastern oyster): 111129014
Entry
111129014         CDS       T09197                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
cvn  Crassostrea virginica (eastern oyster)
Pathway
cvn03020  RNA polymerase
cvn03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111129014
  09124 Replication and repair
   03420 Nucleotide excision repair
    111129014
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cvn03021]
    111129014
   03400 DNA repair and recombination proteins [BR:cvn03400]
    111129014
Transcription machinery [BR:cvn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     111129014
DNA repair and recombination proteins [BR:cvn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111129014
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C Zn_ribbon_recom DUF3716 CpXC Ogr_Delta DZR
Other DBs
NCBI-GeneID: 111129014
NCBI-ProteinID: XP_022330766
EnsemblRapid: LOC111129014
UniProt: A0A8B8DUV1
LinkDB
Position
4:complement(20942809..20945486)
AA seq 127 aa
MDLYETHDDGPGFVGIKFCKECNNMLYPKEDKENKLLLYACRNCDYQEEATNPCIYVNKI
THEVDELTQIIGDVIADPTLPRTEDHPCPKCAHKESVFFQSHSTKAEEGMRLYYVCTNSQ
CVHRWTE
NT seq 384 nt   +upstreamnt  +downstreamnt
atggatttgtacgaaacacacgacgatggcccaggttttgtcggaatcaagttttgtaaa
gaatgtaataatatgttgtatccaaaagaagacaaagaaaacaaactgttgttgtatgcc
tgtcgtaactgtgactaccaagaagaggctaccaatccctgtatttatgttaacaaaatt
actcatgaagtagatgagctgacccagatcattggggacgtgatagcagaccccaccctt
ccccgcacagaagaccacccctgtcccaagtgtgctcacaaagagtctgtcttctttcaa
tctcacagcaccaaagccgaggaaggcatgcgactctactatgtgtgtaccaattcacaa
tgcgtgcatcgctggacagagtaa

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