Daucus carota (carrot): 108215338
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Entry
108215338 CDS
T05350
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03020
RNA polymerase
dcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108215338
09124 Replication and repair
03420 Nucleotide excision repair
108215338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108215338
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108215338
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108215338
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108215338
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
108215338
NCBI-ProteinID:
XP_017243285
UniProt:
A0A161WY68
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Position
3:61221311..61223579
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AA seq
321 aa
AA seq
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MERASYQRFPTVKIRDLKNDYAKFELRDTDASIANALRRVMISEVPTIAIDLVEIEANTS
VLNDEFIAHRLGLIPLTSDRAMSMRLSRDCDACDGDGECEFCSVELHLSVKCVGEQHLEV
TSDDLIPSDHNVVPVGYSGPGDSEPKRGIVIVKLNRGQELKLRAIARKGIGKDHAKWSPA
ATVTFMYEPAIYINENMMDSLTLEEKQGFVDSSPTKVFEIDDKTQQVKIVDPEAYAYDDE
VIKKAEAMGKPGLVEIYAKEDSFIFTVETTGALKASQLVLNAIDVLKQKLDSVRVSDDTA
EADEQFGDLGAHMRGEDVPTW
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagcctcataccaaagatttcccactgtcaaaatcagagaccttaaaaatgac
tatgcaaaattcgagcttcgagacactgatgcaagcattgccaatgctctgcggagagta
atgatctcagaagtgcccaccattgccattgacttagttgaaatagaggctaacacaagt
gtgctcaatgatgagttcatcgctcaccgacttggccttattcctctgacaagtgatcgc
gctatgagcatgcgcttgtcgcgtgattgtgatgcgtgtgatggtgatggggagtgtgaa
ttttgctctgtggagctgcatttgagtgttaagtgtgttggtgagcagcatttggaggtc
acgagtgatgatcttattccttcggatcataatgttgtccctgttggctactctggtccc
ggagattctgagccgaaaaggggaatagtaattgtgaagctaaatcgaggacaagaactg
aagttgagggccattgcccgaaaagggattgggaaggatcacgcaaagtggtcgcctgct
gcaaccgttactttcatgtatgaacccgccatctatatcaatgaaaatatgatggatagc
ctaacactcgaagagaaacaaggtttcgttgatagcagtccaaccaaagtctttgaaatt
gatgataaaacccaacaggtgaaaattgttgatccagaggcgtacgcttatgatgacgag
gtgatcaaaaaagcagaagcaatggggaagcctggactggtggaaatctatgcaaaggaa
gacagctttatcttcactgttgaaaccactggtgcactcaaagcttcgcagttggttctg
aatgctattgatgtcttgaaacaaaagcttgattcagttcgcgtatcagatgacactgca
gaagctgatgaacagtttggggatttgggtgcacatatgcgcggagaggatgttcctact
tggtga
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