Daucus carota (carrot): 108223094
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Entry
108223094 CDS
T05350
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108223094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108223094
Enzymes [BR:
dcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108223094
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
108223094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
108223094
NCBI-ProteinID:
XP_017252653
LinkDB
All DBs
Position
5:39216655..39237307
Genome browser
AA seq
1380 aa
AA seq
DB search
MSKTSEEVVQFTKQPYIEDVGPRRIKSITFSTFSEADIFKAAEVQVYKDKYYDEKRKPVE
GGLLDPRMGPTSKNGFCATCDGSFRDCPGHYGCLTLSVPVYNVGYLGTIVDILKCICKSC
ASILLPEKEYADYLKKMRKDIDPLKKNELFKRIVKKCTAMASSKKAVKCLKCGYINGTVK
RAGLGVEHDRSKVTDSSLEESRSAISHLKDSTGSKSPSIINPDRVLSLFKKIQDKVCDLL
YLSDRPEKFLITSIAVPPVPIRPSVFVDGGQMSNENDISERLKLIIQTNATLHQNLTTAS
YAPKALELWPLLQVEVARYINSDVRGVPLSMQESKPLSGFVQRLKGKQGRFRGNLSGKRV
EYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSSHNIEKLRQCVRNGCYKYPGANFI
RMADGTLMVLKFPSRVRLADELKFGQIVERHLEDGDIILFNRQPSLHRMSIMCHRARIMP
WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAST
QDFLTSSFLITRKDTFYDRASFSLMCCYMGDAMDHIDLPTPAVIKPIELWTGKQLFSVLL
RPHANMRVYLTLTVKEKSYTSGETMCQSDGFVYFRNSELVSGQLGKATLGNGNKDGMYSI
LLRDYKAHAASVCMNRLAKLSARWIGNHGFSIGIDDVQPGDLLNKDKEGKITDGNVQCDE
LINKYNNGKIELLAGCDAAQTLETLIAKVLNDIRGEAAKLCMKSLHWRNSPLIMSQCGSK
GSPINISQMVACVGQQSVSGGRAPNGFLDRSLPHFHKNSKIPAAKGFVGNSFYSGLTATE
FFFHTMGGREGLVDTAVKTADTGYISRRLMKALEDLAVHYDKTVRNASGCIVQFTYGDDG
MDPSQMEEKGGLPLNFDRLLLKVKAACPPEEHIGMPSSEIVKVVDETLTKHVMASEGDCS
KAFNKSLSEFLKACAERSNNTRVALKLEKELRSEDFDNLENVAKNISGITHQQLQVFMET
CISRYHQKVVEGGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTQGVPRIKEIINAA
KNISTPIITAKLEFSDSLVSARLVKGRIEKTVLGQVAKSIKIVMASRSASVTVTLDMDVI
QASELCINAHTVKESILSTPKIKLKEQNIHVLDARKLEVIPTSDRSKLHFELHRLKDRLP
TVVVRGINSIKRAVIKECDGKKGTYELAVEGTGLDAVMGTEGVDGPKTTSNHIMEVQKTL
GIEAARKCIILEIQKTMKDMSIDVRHMMLLADLMTYKGEVLGITRHGIQKMKDSVLMLAS
FEKTSDHLFNASVNGRVDKIEGVSECIIMGIPMQIGTGMLKVMQRVPPVELQRGADPVIS
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagacatccgaagaagtggttcaatttacgaagcagccttacattgaagatgtt
ggcccgagaagaattaagagcattacattctccaccttttctgaagccgatatatttaaa
gcagcggaagttcaagtatacaaggataaatattatgatgagaagagaaagcctgtagag
ggaggcttattggaccctcgtatgggtcctacaagcaaaaatgggttttgtgcaacctgc
gatggaagctttcgagattgtccagggcattatggttgtctaactctttcagttccggtt
tataatgttggatatttaggcactatcgtggatattttaaagtgcatttgcaagagttgt
gcctccatactgttaccggaaaaagaatatgcggactatttaaagaagatgcgaaaagat
atcgatcctttaaagaagaacgagcttttcaaaaggatagtaaaaaagtgcactgcaatg
gcaagcagtaagaaggcggtgaagtgtttaaagtgtggatatataaatggtacggttaaa
agggctgggttgggtgtggaacatgatcgttcaaaagttacagatagttctctagaagaa
tctcgttcagctatatcgcatttaaaggattccacaggatctaagtcgccttccattatt
aaccccgacagagtactttctctttttaagaaaatacaggacaaggtttgtgacttgcta
tatctgagtgatagacctgagaaattcctaatcacaagtattgctgtgcctccagttcct
attcgcccttctgtatttgtcgatggtggacagatgagcaatgagaatgacatatcagag
agattgaaactaatcattcaaacaaatgctactcttcatcagaatttaacaacagcaagt
tatgcacccaaagctcttgaactgtggcctctgttgcaagtggaggttgcacggtacata
aacagcgatgtacgtggagtgccactaagtatgcaagaatccaagcccctgagtggtttt
gttcaacgcctaaaaggaaaacagggacgctttcgaggaaatttgtctgggaaacgagtg
gaatatactgggagaactgttatatcgccagatccgaatcttaagattacagaggttgca
attcctatcctgatggcccaaattttgacttatcctgagcgtgtatcaagtcataatata
gaaaagctgaggcaatgtgttagaaatggatgctacaagtaccctggcgccaattttatc
agaatggctgatggaactttaatggtgttaaagttcccttccagagtgcgccttgctgat
gaactgaaatttggtcagattgtcgaacgtcatttagaagatggtgatattattcttttc
aacagacaacccagcttacatcgaatgtcaatcatgtgccatagggcaagaataatgcca
tggcgtacattgcgattcaacgagtcagtttgcaatccttacaatgctgattttgacggt
gatgagatgaatatgcatgtcccacaaaccgaggaggctcgaacagaggctcttatgttg
atgggggtgcaaaataatttatgcacaccaaagaatggagagattttggtggcgtccaca
caagatttcttgacttcctcttttctcatcacaagaaaggacacattctatgaccgtgca
tcattttctcttatgtgttgctatatgggggatgcaatggatcatattgatttgccaaca
ccagcagtaatcaagccaatagaactctggacgggtaaacaattatttagtgtcttattg
cgcccacatgcaaacatgagagtttatctgactctcactgtaaaagagaaaagctacacc
tctggggagacgatgtgccaaagtgatggatttgtgtattttcgtaatagtgagctagtg
agtggccaacttgggaaggcaaccttaggaaatggaaataaagatggtatgtactctatt
cttcttcgggactacaaagcacatgccgcttctgtatgtatgaatcgtttggccaagctg
agtgcacggtggattggtaatcacggattttcaattggaatcgacgatgttcagcccgga
gatcttttaaataaagataaagagggtaaaattactgatggtaatgtacagtgtgatgaa
ctgataaataagtacaacaatggaaagattgaacttctagctgggtgtgatgctgctcag
acattagaaactctgatagccaaagttttaaatgatattcgaggggaagctgctaagctt
tgcatgaaaagcttgcattggaggaacagcccccttattatgtcacaatgtggttctaaa
ggatcgcccatcaatattagtcagatggttgcctgtgttggtcagcagtctgtcagtggt
ggacgtgcaccgaatggatttctagaccggagtcttcctcattttcataaaaactcaaag
atacctgcggccaagggctttgttggaaattcattttatagtggtttgactgctacagaa
tttttctttcacacaatgggaggtcgagaaggccttgtggatacagcggttaaaacggct
gacactgggtacatttcacgtcgattaatgaaagctcttgaagatctagctgttcattat
gacaaaactgtacgaaatgctagtggatgtattgttcagtttacctatggtgatgatggc
atggatccatcacaaatggaagaaaaaggtggactgcctctcaattttgacagattatta
ttgaaagtcaaggctgcatgccctcctgaagaacatattggcatgccgtcatcagaaatt
gtaaaagttgttgatgaaacactcacaaagcacgttatggcttcggaaggggattgttca
aaggcctttaataaatcattatctgagtttcttaaagcgtgtgccgaaagatcaaataat
acaagggtagctctgaaattggagaaagagctgaggagtgaggatttcgacaacctagaa
aatgttgctaaaaatatatctggcattacccaccagcagctacaggtcttcatggaaaca
tgtatttcccgctatcatcagaaggtagttgaaggtggaacagcaattggggcgattggg
gcacatagtattggtgagccaggaacacagatgactttgaagaccttccactttgcagga
gttgcaagcatgaatgttacacagggagtacctcgtattaaggaaatcattaatgcagcc
aagaacatcagtacacctatcattactgccaaactcgagtttagtgatagtttagtaagt
gcgagactggtgaagggtcgtattgaaaaaactgttctaggccaggttgcaaagagcatc
aagattgtcatggcatcacgatcagcatctgttactgtcacccttgacatggatgtaatt
caagcttcagaactatgtataaatgcacacacagtaaaagaatcaatattaagtactcca
aagattaaactaaaggaacagaacatacatgttctggatgctagaaagttggaagtcatt
cctacatctgatagaagcaagcttcatttcgaactccacaggctaaaagatagacttcca
acagttgttgtgaggggaattaattcgattaagcgtgcagttataaaggaatgtgacggt
aaaaaaggcacgtatgagttggccgttgaaggtacgggtcttgatgctgtcatgggaact
gaaggagttgatgggcctaagacaaccagtaatcacatcatggaagttcagaagactctg
ggaatagaagctgcaagaaaatgtataattctggaaattcagaaaacgatgaaagatatg
agtatagatgtacgtcatatgatgcttttagcagatctgatgacatataagggtgaagtt
ttaggaatcacgagacatggaattcagaaaatgaaggatagtgtattgatgcttgcttct
tttgagaaaacatctgatcacctttttaatgcttctgtaaatgggagggttgacaaaatt
gaaggagtaagtgaatgcatcatcatgggcataccaatgcagataggcacgggaatgcta
aaagttatgcaaagagttccaccggttgaactgcaacgtggagcagatccagtaataagc
tga
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