Dendrobium catenatum: 110097277
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Entry
110097277 CDS
T05027
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
dct
Dendrobium catenatum
Pathway
dct03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110097277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dct03019
]
110097277
Enzymes [BR:
dct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
110097277
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110097277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
AAA_22
AAA_24
ATP_bind_1
AAA_16
ABC_tran
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
110097277
NCBI-ProteinID:
XP_020679212
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MAASASVRQFKLAKESELRVEVGTDSPYRVRLLSGTAEIFGTELPPENWLSIPPRQKFAI
FTWHGATVEVEGTSEVEYIADETPMASYVNVHAILDSRRARAKASSNSNVVASQGPRVFV
VGPTDSGKSSLCRMLLSWACKQGWKPMFVDLDIGQGSITVPGCIASTPIEMPIDSVEGIP
LEMPIVYYYGHTTPSINAELYKVLVKELAQTLERHFSANSESRAAGMVINTMGWVEGLGY
ELLLHAIETFNANVVLVLGQEKLYSMLKDVTKNKPNMDVVKLHKSGGVVSRNPKFRQKSR
GFRIREYFYGLFNDLSPHSNIVSFNDITVYRIGGGPQAPRSALPIGAEPLADPTRLVAVN
INRDLLHLILAVSYAKEPDQIISSNVAGFIYVTDIDIQRKNITYLAPCPGELPSKLLIVG
TLTWLES
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttcggcgtcggtcaggcagtttaaactggcaaaggagagcgaacttagggtt
gaggtcggcaccgattctccttatcgtgtccgcctcctctccggcactgccgaaattttc
ggcaccgagctccccccggagaactggctctccattccccctcgtcaaaagtttgcgatt
tttacgtggcatggagctactgtggaagtggaaggaaccagcgaggtcgagtatattgcc
gatgagactccaatggcgagctatgtgaacgtacacgcgatactggatagcaggagagcg
cgagcgaaggcgtcgtctaatagcaacgtggtagcttctcagggtcctcgggtttttgtg
gttgggcccacggattctggaaaaagtagtctgtgcaggatgcttttgagttgggcgtgt
aagcagggctggaagcctatgtttgtagatttggatattggtcagggatccattactgtt
cctggatgtattgcttccactccaatcgaaatgcctattgattctgttgaagggatacct
ctagaaatgcccatcgtgtattattatggacacactactccaagcataaatgcagaacta
tacaaggttcttgtgaaggagctagctcaaacattggagaggcatttctctgctaattca
gagtctagggctgcaggcatggtgataaacactatgggttgggtggaaggccttggttat
gagttacttcttcatgcaattgagactttcaatgccaatgttgtcctagttttaggacag
gaaaaactctatagcatgttgaaagatgtaacaaagaacaaacctaatatggatgttgtt
aaacttcacaaatccggcggtgttgtttcaaggaatccgaaatttcgccagaaatctagg
ggcttcaggattagggaatacttttatgggctcttcaatgacctgtctccacattctaac
attgtcagtttcaatgatataactgtctaccggattggtggtggcccacaggctccgcgt
tcagcattacctattggagctgagccgttagctgaccctactcggctggttgctgttaac
ataaacagagacttgcttcatttgattcttgctgtttcatacgcaaaggaaccagatcaa
ataatctccagtaatgtagctgggtttatctacgtcacggacatcgacatccagaggaag
aatattacatatcttgcaccttgcccaggtgagctcccaagcaagctgttgattgtggga
actttgacatggttagaaagctag
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