Dendrobium catenatum: 110112331
Help
Entry
110112331 CDS
T05027
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
dct
Dendrobium catenatum
Pathway
dct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110112331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dct03021
]
110112331
Enzymes [BR:
dct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110112331
Transcription machinery [BR:
dct03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110112331
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
110112331
NCBI-ProteinID:
XP_020700182
LinkDB
All DBs
Position
Unknown
AA seq
1640 aa
AA seq
DB search
MSEARLRPDEAASETVESIDFSFYSADEVRKISFKEITNAELFDIKESPVPDGLYDPALG
PMKELDTCKSCGQQDLQCPGHYGHIELARSIYNPLMFRNLKNLLQIACLYCHNFRMGEKK
VLRYVSILNLIIEGNITAAKKMATNFWDEVIFGAEDTKQHSDSLSDSNYLERRWTSIQQA
EAASVLLEIMKETPKKCDYCKKSNPRLQSRTFGWLEKFFPRSEFSVKAIEDYSLGTASEG
DGELLDPAKSSKRTNRSRELPPEFLKQIASSRRVDLPPTEAEGILKDLWKKESKLCMLIC
DIQCRRLRNFEREKGYAMFFLKALLVPPNKFRPPASSGKELLEHPQNILLGRVLDSNVAL
GKASHQYVLQKWRALQNSVNLLFDCTKGFGRSDRVLNGIRQLVDRKEGMLRQKMMGKRVN
FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTSWNATKLRQAILNGPDVYPGATHFM
EREKFYTLEAGYIGLIPSMDMRNAIARKLPTSRAITKVGMGPETKLEGKIVYRHLQDGDI
VLVNRQPTLHKPSMMAHVVRVMKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAE
SVHIVDANKQYIVPTSGDPIRSLIQDHIVSAVILTKIDTFLTREEFTQLLYASCVPTPAY
SSQAVKFGKKISALVAVDDIQLPPPAIWKPKLLWTGKQVITAILHHIIKGHEPLTVEKEG
RIPMEYFGKDATERKLFVYNNDLVHGIIDKAQFGKYGLVHTVHELYGPDIAGQLLAVFSR
LFTFFLQMHGFTCGVDDLLVFRDSDMKRERILENSERCSEDVHSRFTAAAAATNDFEDPL
KLLRETEKVVRRNGESATKRLDRMMSNALNALTSEVNLVLFPGGLQKPFPNNCLSLMTLT
GAKGGLVNMTQISSLLGQQELEGQRVPRMVSGKTLPCFPAWDISSRAGGFISDRFLTGLR
PQEYYFHCMAGREGLVDTAIKTSRSGYLQRCLVKNLECLKVCYDHTVRDADGSIIQFTYG
EDGVDVQKSSFLGKFEALLMNQKVLLENLNAQLENAHLSKSNGYIKELPSELKEKAMHFF
SRLSKNPKGYFYQIKRKDLMKLVKLKYLSSLAEPGEAVGVLAAQSVGEPSTQMTLNTFHL
AGRGELNVTLGIPRLTEILMHATVSISTPVMTCPLLDWRSREDAEFIAAKLRRICLADVI
ESIEVSTVPFSTSGKEVYTLYKLILKLYSPVFYPPHSGITLEVCMETLQTIFIKEMEEEI
TKHLLLSSKIKSFTRTSFKDFVSDEADLDEPASHEAMESKNVIEENADNVHESNDDDDDD
DDNVMDAEDLGADAEKSKRQANDEIEYDDNIENEMSASDDEYDGKQSESDVESVLGDKED
YDIGGQDPSTASKEEVSQTPSTIASTASHIAPEKEVKSKVKTKVIKRCGKRSGRVLLAES
KGLEFEIHFKFCQDEPPVLLGELALKTAKRVYVKACKNIERCSVVEPKLSGDPLSLQTAG
VNLNVLLNLYEYIDINKIVTNDIHAMLKTYGVEAARATILNEVKGVFDAYGIQVNIRHLM
LIADAMTCNGEYRPLNRLGMQKYSTSPFCTMSFETATNTISESAFHGYVDTMDSPSACVS
LGKIVKVGTGGFDLLQNIQL
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaggcgcggttgcgacctgatgaggcggcatctgagactgtggagtctatcgat
ttcagcttttactccgcagacgaggttaggaagataagcttcaaggaaatcacgaacgca
gaactttttgatatcaaggaatcacctgttccggatggattgtatgacccggcattggga
ccgatgaaggagcttgatacgtgcaaatcttgtggccaacaagatttacaatgcccgggt
cactatggtcatattgagcttgcaagatcaatttacaatccattgatgtttaggaatctt
aaaaatcttcttcaaattgcttgtttatattgccataactttaggatgggagaaaaaaag
gttctcagatatgtttccatcctgaaccttatcattgaaggcaacattactgcggccaaa
aagatggcaaccaacttttgggatgaggtaatttttggggctgaagatacaaagcagcac
tctgattcactttcagattcaaattatttggaaagaaggtggacctctattcagcaagct
gaagctgcttctgttctactggaaattatgaaagaaacgcctaagaagtgcgattactgt
aaaaaaagtaatcccaggcttcagagccgtacatttggttggttagaaaagtttttccca
cgttctgagtttagcgtcaaggctattgaagattatagcttaggaactgcttcagagggt
gatggagaactattggatcccgcaaaatcttcaaagagaaccaatcgatctagagagcta
cctcctgaatttttaaagcagatagcgtcatctagaagggttgatctgccaccaacggag
gctgaaggtattttaaaagatttatggaagaaggaatcaaagctatgcatgcttatatgt
gacattcaatgcagacgtttaaggaattttgagagagaaaaaggttatgcaatgtttttc
ctgaaggctcttcttgttccacctaacaagtttcgtcctcctgcttctagcgggaaagag
ttgttggaacaccctcaaaatattttattgggccgagtgctggattcgaacgtcgcttta
ggcaaagctagtcaccaatatgtcttgcaaaagtggcgggcccttcaaaacagtgtaaat
ttgctgtttgattgtacgaaggggtttggtagaagtgatagagtcctaaatggcatccgc
cagttggtagataggaaggaaggcatgcttcgccagaaaatgatgggaaagagggttaac
tttgcatgccgatctgtaatatctccagatccttacctagcagtcaatgaaataggaatt
cctccttattttgctctcaggttgacatatccagagagagtaacttcctggaatgctact
aagctgagacaagctatcttgaatggtcctgatgtttatcccggagcaacacatttcatg
gagagagagaagttctatacattggaagcaggttacattggacttataccaagtatggac
atgcgaaatgcaatagctaggaaattgcctacatcaagagcgattactaaggtgggaatg
ggcccagaaactaaactagaagggaaaattgtatatcgtcatttgcaagatggggatatc
gtgctggttaatcgacagccgacgctgcacaagcctagtatgatggctcatgttgtacgg
gtaatgaagggagaaaaaacaattcgtatgcactatgctaattgcagcacttacaatgct
gactttgatggagatgaaatgaacgttcattttcctcaagatgagatttcacgggctgag
tctgttcacatcgttgatgccaataaacagtatattgttccaaccagcggggatcccata
agaagcttgattcaggatcacattgtgagtgctgtcatcctaacaaagatagacacattt
ctaacccgtgaagagttcactcagcttttatatgcttcctgtgtaccaaccccagcttat
agttctcaagctgttaagtttggcaaaaagatttctgctttagttgctgttgatgatatt
caactccctcctcctgctatatggaagccaaaactgctgtggacaggaaagcaggttatt
acggcaattctacaccatattataaagggtcatgaaccacttactgttgaaaaagaggga
agaattcccatggagtattttggaaaagatgctactgaaaggaagttgtttgtttacaac
aacgaccttgtgcatgggattattgacaaagctcagtttggaaaatatggtttagttcat
actgttcatgaactctatggcccagacattgctgggcaattgcttgcagtgttcagtcgc
ctattcactttttttcttcagatgcatggttttacatgtggagtggatgatcttttggtt
ttccgagattcggatatgaagagggaaagaatattggaaaacagtgaaagatgtagtgaa
gatgttcattcccggtttacagcagcagcagcagcaacaaatgattttgaagatccattg
aagctgctcagagaaactgagaaagttgtcaggagaaatggagaatctgcaacaaaacgg
ctggataggatgatgtcaaatgctctgaatgctcttacttcagaggttaatcttgtacta
tttcctggtggcttgcagaaaccatttccaaataactgcctgtctctgatgacgttaact
ggagcaaaaggtggtttggttaatatgacacaaatatcatcgttgttaggccagcaagaa
ctagaaggtcaacgtgttccacgtatggtttctgggaaaactttaccgtgctttcccgca
tgggatatttcatctcgagctggaggttttattagtgatcgttttttgactggtttgcgc
cctcaagagtactacttccattgcatggctggtcgtgagggattggtggatactgctatc
aaaacatcccgcagtggatatctccagcgatgtttggtgaagaatcttgaatgtttaaaa
gtttgttatgatcatacagtacgtgatgcagatggatctatcattcaatttacatatggt
gaagatggagttgacgtacagaagagcagttttcttggtaaatttgaagccctcctgatg
aatcagaaagtacttcttgaaaatttgaatgctcaacttgaaaatgcccatttatcaaag
tcaaatggctacattaaagaattacccagtgaactcaaggaaaaagctatgcactttttt
agtcgactctcgaagaatccaaaaggctatttttatcagattaagagaaaagacctgatg
aagttagtgaaacttaagtacctatcaagccttgctgaacctggtgaagcagttggtgtg
cttgctgctcagtcggttggggagccttcaacgcagatgacgctcaacacttttcacctt
gctggacgtggagagttgaatgtgacgcttggtatacctcgtttgactgaaatactgatg
cacgcaactgtgagcatcagtactcctgttatgacctgccctttgcttgattggcgatcc
agggaggatgctgaattcattgctgcgaagctgaggagaatttgtttagcggatgttata
gagagtatagaggtctccactgtgccattctctactagtggaaaagaggtgtacacccta
tataagttaatattgaaactttactctcctgtgttttatcctccacattcgggtattacc
ttggaagtttgcatggagaccttgcaaacaatttttatcaaagagatggaagaagaaata
accaagcacttgttattgtcatctaagattaagagctttacaagaacctctttcaaggat
tttgtatcggatgaggctgatttagatgaacctgcaagccatgaagcaatggaaagtaaa
aatgttattgaagagaatgctgacaatgttcatgaaagtaatgatgatgatgatgatgac
gatgataatgttatggatgcggaagacctaggcgctgatgctgagaagagtaagaggcag
gccaatgatgaaattgaatacgatgataatattgaaaatgaaatgtcggcttcggacgat
gaatatgatggcaagcaatctgaatctgatgttgaatctgttcttggcgataaagaagat
tatgacataggaggtcaagatcccagcactgcatcgaaggaagaagtatctcaaacccca
tcaacaattgcatcaactgcttcgcatattgccccggagaaggaagtaaagtccaaagtc
aaaacgaaggtcattaaaagatgtggcaaaaggagtggtagagtgcttctagcggagtcc
aaaggattggaatttgaaatccatttcaagttttgtcaagatgaacctccagttttactg
ggagagcttgctctgaagacggccaagcgtgtatacgtcaaggcatgcaagaacattgag
cgttgctcagtggtggaaccaaagctaagcggcgatcccctctcgctccagactgcaggg
gtgaacttgaatgtgctcttgaacttatatgaatacattgatatcaataagattgtcaca
aacgatattcatgcaatgctgaaaacatatggtgtggaagctgcaagagcgaccatctta
aatgaggtgaagggcgtcttcgatgcttatggcattcaggtcaacataagacacttgatg
ttgattgcagatgcaatgacctgcaatggcgagtatcgtcccttgaatcgtcttggaatg
cagaagtacagcacttctcctttctgtacgatgtcgttcgagaccgcgactaacaccatc
tcagagtctgctttccatggttatgtggacaccatggactcaccttcagcttgtgtctcc
cttggcaagatagtgaaggttggtacaggtggctttgatttgctgcagaacatacagtta
tga
DBGET
integrated database retrieval system
