Deferribacter desulfuricans: DEFDS_1954
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Entry
DEFDS_1954 CDS
T01188
Name
(GenBank) MiaB-like tRNA modifying enzyme YliG
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
ddf
Deferribacter desulfuricans
Brite
KEGG Orthology (KO) [BR:
ddf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ddf03009
]
DEFDS_1954
Enzymes [BR:
ddf01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
DEFDS_1954
Ribosome biogenesis [BR:
ddf03009
]
Prokaryotic type
ribosomal protein modification factors
DEFDS_1954
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
FAM186A-B_N
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
BAI81405
UniProt:
D3P9L5
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Position
1983210..1984559
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AA seq
449 aa
AA seq
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MSIKIASVSLGCPKNQVDLEVLLGKMTDEDFMLTNNPDEADAIIINTCGFIEPAVMEAVE
TILEFESYKEKGKKIIVTGCMVERYKNEFEKEFPFVDYYTGVGELKSVIDFLKNNSKPKQ
TEKNLYFSKNRVILNPQSFAYLKIADGCRNRCSYCTIPSIRGTQKSRKIEDILEEAQRLI
DGGVKELILISQDTTKYGIDIYGSFMIKPLLEKLSSLEGDFYIRTLYLNPDGVDGELIDI
ILNNPKIINYFEIPIQHINDRILKLMNRKFNSSHIKKIFTLIKEKSEDAFIRTTFIVGFP
SETEEEFNEIIDFLHEFKPDFAGFFPFYPEDGVKASTMDGQISKREKNKRVKQLEKIQKK
ITSERLKSLKKEKILCFAEKYNDDFDFIVEGRAIFQTPDIDGKVYIIDGVADSGVGPYLC
KIKRVVYPDLYCKIESPYINEVTDEKSSC
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtcgataaaaatagcttcagtaagtttaggttgtccaaaaaaccaagtggaccttgag
gttctccttggtaaaatgactgatgaagattttatgcttacaaataatccagatgaagct
gacgcaattattataaacacatgcggttttattgaaccagcagtaatggaagctgtggaa
acaattttagaatttgaatcatacaaagaaaaagggaaaaaaattatagtaactggatgt
atggttgaaagatacaaaaatgagtttgaaaaagaattcccttttgtggactattataca
ggtgtgggagaactaaaatctgttatagattttctaaaaaataattctaaacctaagcaa
acagaaaaaaatttatacttttctaaaaacagagttattctcaatccgcaaagctttgca
tatcttaaaattgcggatggttgtaggaataggtgctcttactgcactattccatcaata
cggggaactcaaaaatctagaaaaatcgaagatatattagaggaagcacaaagattaata
gatggaggagtaaaagagcttatactcatctctcaagataccactaaatatgggatagat
atctacggctcttttatgataaaacctctattggaaaaactttcatctttagaaggtgat
ttctatattagaaccctttacttaaaccctgatggtgtagatggagagcttatcgatata
atactaaataaccctaaaattataaattattttgaaatacctatccaacacataaatgac
agaatattaaagctaatgaatagaaagttcaactcatcccatatcaaaaaaatatttaca
ctaattaaggaaaaaagtgaggatgcatttataagaaccacatttattgttggtttccca
tctgaaactgaagaagaatttaatgagataatagattttctgcatgaatttaaaccagat
tttgctggatttttcccattttatccagaagatggagtaaaagcttctactatggatgga
caaatttctaaaagagaaaagaataaaagagtgaagcaacttgaaaaaattcaaaaaaag
ataacttcagaaaggctcaaatctctcaaaaaagaaaaaatactctgctttgcagaaaaa
tataatgacgactttgattttattgtagagggtagagctatctttcaaacacctgatata
gatggtaaagtatatatcatagatggtgttgctgactcaggagttggaccatatttatgc
aagataaaaagggttgtatatcctgatttatattgtaaaatagaatctccatacataaat
gaggttacagatgaaaaaagttcttgttag
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