Dictyostelium discoideum (cellular slime mold): DDB_G0285507
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Entry
DDB_G0285507 CDS
T00245
Symbol
clp1
Name
(RefSeq) pre-mRNA cleavage complex subunit
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DDB_G0285507 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ddi03019
]
DDB_G0285507 (clp1)
Enzymes [BR:
ddi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
DDB_G0285507 (clp1)
Messenger RNA biogenesis [BR:
ddi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
DDB_G0285507 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
AAA_35
CbiA
AAA_24
ATP_bind_1
SRPRB
Motif
Other DBs
NCBI-GeneID:
8625143
NCBI-ProteinID:
XP_638095
dictyBase:
DDB_G0285507
UniProt:
Q54N48
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All DBs
Position
4:complement(3327387..3328942)
Genome browser
AA seq
459 aa
AA seq
DB search
MSNDNSVNINNFSSMNGGGGGSDIQFPLKPSQQQQQQQQNSINQSTIRTLEITQELRYEI
DFDQNGWMKLIEGTAECFGTELSLNKVYKLSGTKGAVFTWTGCKIEITNNCQPYIGEKTP
MPQYAGVYQELDAFRVSILDEPKKSGPRVIIVGPTDSGKSSLSKILLAYSARSGYQPLFV
DLDPGQGSITIPGTISAAHIQNPLDIEEGLAGGIPLAHFYGHTSLDVNPDLFKALCKNLA
SFIDKQLDSSNISRISGFIANTCGWIDGLGYKILLQNIDVFKANLIIVMDNEKLYSDISS
HYSQKDNSIKIIKLPKSGGVFIRPPVFRKKTRMNRIKEYFNGINDNLSPHYIVLDFKDVS
IYRTGGGPAAPASALPIGTSSQIDPLQITEVYPSLDMCHSIFAISYAKQASNIFHSNVAG
FLYVSDIDMETKKITVISPAPGPLPSRFLLLGTLKWMEN
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgataatagtgtaaatattaataatttttcaagtatgaatggtggtggtggt
ggttcagatattcaatttcctttaaaaccatcgcaacaacaacaacaacaacaacaaaat
tctataaatcaaagtacaattagaacattagagattacacaagaattaagatatgagatt
gattttgaccaaaatggttggatgaaattaattgaaggtacagcagaatgttttggtacg
gaattatcattaaataaagtttataaattgtcaggtacaaagggtgcagtttttacatgg
acaggttgcaagatagagataactaataattgtcaaccttatattggggagaaaactcca
atgccacaatacgcaggagtatatcaagaattggatgcatttagagttagcatattggac
gaaccaaaaaagagtggtccacgtgttataattgtcggtcctaccgatagtgggaaatcg
tcactctcaaagatacttttagcctacagtgcccgatcaggctatcaaccattatttgtt
gatttagaccctggtcaaggttcaatcaccataccaggcacaatttcagcagcacatatt
caaaatccattggatatcgaggaggggttagctggtgggattccattggctcatttctat
ggtcacacttcattggatgtgaatcctgatctctttaaagcactttgtaaaaatttagca
tcatttatcgataaacaattagacagttcaaacatttcaagaatctctggtttcattgca
aatacttgtggttggatagatggtttaggttataaaatactcttacaaaatattgatgtc
tttaaagcaaacttaatcattgttatggataatgaaaaactttatagtgatatcagttct
cattattctcaaaaagataattcaattaaaattataaaattaccaaaatctggtggtgta
tttataagaccaccagtatttagaaaaaaaacaagaatgaatagaataaaagaatatttt
aatggtataaacgataatttatcaccacattatatagtattagattttaaagatgttagt
atttatagaactggtggtggtcctgctgcaccagcttcagcattaccaattggtacttca
tctcaaattgatccacttcaaatcactgaagtttatcctagtttagatatgtgtcattca
atatttgcaatctcttatgcaaaacaagcttcaaatatttttcattcaaatgttgctggt
ttcctttatgtttctgatatcgatatggaaacaaagaaaattacagttatttcaccagca
ccgggtccacttccttcaagatttttacttttaggcacattaaaatggatggaaaattaa
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