Dechloromonas sp. TW-R-39-2: GBK02_12390
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Entry
GBK02_12390 CDS
T08942
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
dech
Dechloromonas sp. TW-R-39-2
Pathway
dech00540
Lipopolysaccharide biosynthesis
dech01100
Metabolic pathways
dech01250
Biosynthesis of nucleotide sugars
Module
dech_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
dech00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
GBK02_12390 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
dech01005
]
GBK02_12390 (rfaD)
Enzymes [BR:
dech01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
GBK02_12390 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
dech01005
]
Core region
GBK02_12390 (rfaD)
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Motif
Pfam:
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
NAD_binding_4
Polysacc_synt_2
KR
adh_short
DapB_N
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
QRM20131
UniProt:
A0A974SXA7
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Position
complement(2568035..2569033)
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AA seq
332 aa
AA seq
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MYIVVTGAAGFIGSNIVKALNERGVTKIIAVDNLTKADKFKNLIDCEIADYLDKHDFIER
IQAGHYDGEIEAIFHEGACSDTMETDGRYMMENNYRYSLILLDWCQDQDVQFLYASSAAT
YGGSNVFKEERQYEGPLNVYGYSKFLFDQVVRQRLAKEPSSQIVGFRYFNVYGPRETHKG
RMASVAFHNYNQFKADGKVKLFEGSHGYENGGQMRDFVFVGDVAKVNLFFLDNPDKSGIF
NLGSGRAQSFNDVAVAAVNGCRKAKNEEALTLDQLRTQGLLEYTAFPEALKGKYQAFTQG
DLTRLRAAGYEAPMATVEEGVGQYIEWLHKNV
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgtatatcgtcgttaccggcgctgccggctttatcggttccaatatcgtcaaggcgctc
aatgagcgcggcgtgaccaagatcatcgcggtcgacaacctgaccaaggccgacaagttc
aagaacctgatcgattgtgaaattgccgattacctcgacaagcacgatttcatcgagcgc
atccaggccggccactacgacggcgaaatcgaagccattttccacgagggtgcttgctcg
gacacgatggaaaccgacgggcgctacatgatggagaacaactaccgttactccctcatt
ctgctcgactggtgccaggatcaggacgtccagttcctctacgcctcaagcgcagcaact
tacggcggcagcaatgtcttcaaggaagagcgccagtacgaaggcccgctcaacgtttat
ggttattccaagttcctcttcgaccaggtcgtgcgccaacgtctggccaaggagccttca
tcgcagatcgtcggtttccgttatttcaacgtttacggtccgcgtgaaacgcacaaggga
cgcatggcttcggtcgccttccacaactacaaccagttcaaggccgacggcaaggtgaaa
ttgttcgaaggttcgcacggctatgagaatggtggccagatgcgtgacttcgtctttgtc
ggcgatgtcgccaaggtcaatctgttcttcctcgataacccggataaatcgggcattttc
aatctcggctccggtcgggcgcaaagcttcaacgatgttgcggttgctgcggtcaacggc
tgccgcaaggccaaaaacgaagaggcgctgacgcttgaccagctgcgtacgcaaggcctg
ctcgaatacaccgctttcccggaagcattgaaaggcaagtatcaggcttttacccagggc
gatctgacccgtttgcgcgctgccggttacgaagcaccgatggcgacggtcgaagaaggc
gtcggccagtacatcgaatggctccataaaaatgtataa
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