Cavenderia fasciculata (cellular slime mold): DFA_01263
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Entry
DFA_01263 CDS
T02668
Symbol
clp1
Name
(RefSeq) pre-mRNA cleavage complex subunit
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DFA_01263 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_01263 (clp1)
Enzymes [BR:
dfa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
DFA_01263 (clp1)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
DFA_01263 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
CbiA
nSTAND3
Motif
Other DBs
NCBI-GeneID:
14873535
NCBI-ProteinID:
XP_004359232
UniProt:
F4PRU6
LinkDB
All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MDRQDISSFIGGTDLAAAPIPTVIFNLPKEHELRFEVEHGETALIKLIEGNAEYFGTELL
LNREYKLTGCKGAVFTWNSCKLEVSQSTKAYIANETPMMQYARVHKIMDDIRISCLSNRE
SGPKVIIVGPTDVGKSSISKILLGYSTRLGYAPTFVDLDPGQGSITIPGAVCASLVDKPV
DIEDGLTNSLPFVQYYGHTSLDANPTLFKALVSSLATSIEKRMETNEQARVSGVIINTCG
WIDGLGYEILIDSIDIFKANLIVVMDNDKLYSELNKKYTGAIKVIKLPKSGGVYLRSPIF
RKKTRMSKIREYFYGISGDLCPHFTILDFKDIVVLKTGGGPAAPSSALPIGAQSVIDPLQ
LQEVTPSTDMIHSILAVSYTKSKQSILKSNIAGFLYVTEVNLETKKMTVLAPCPGLIPSK
FLLMGTLKWLE
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggatagacaagatatatcatcatttattggaggaacagatctagcagctgcaccaatc
ccaaccgttatattcaatctaccaaaagaacatgaactacgttttgaagttgaacatggt
gaaactgctctcataaagttgattgaaggaaatgcagaatactttggtacagagttatta
ttaaatagagaatataaattgacaggatgtaaaggagcagtgtttacatggaattcatgc
aagttggaagtatcacaatcgacaaaggcatatattgcaaatgagactccaatgatgcaa
tatgctcgtgtacacaagatcatggatgatattcgtatttcatgtctttcgaatcgcgag
tctggtcccaaagtgatcattgtcggaccgaccgacgttggaaagagttcaatctccaag
attctattgggatactctacacgtctaggttatgcaccgacatttgtcgatctcgatccc
ggacaaggatcaatcaccataccaggtgctgtttgtgcatcacttgtagacaaacccgtc
gatattgaagacggactcacaaactctctaccatttgttcaatactatggacacacctca
ctcgatgccaacccaacactctttaaagcgttggtgtcaagtctggcgacttcaatcgaa
aagcgtatggaaaccaacgaacaagcaagagtgtcgggtgtcattatcaatacttgtggt
tggattgatggtctaggttatgagatcctcatcgattctatcgatattttcaaagcaaat
cttatcgttgtcatggataatgataaattgtacagtgaattaaataaaaagtatacaggt
gccattaaagttattaaattaccaaaatctggtggtgtttatcttagatcaccaatattt
agaaagaaaacaagaatgtcaaagattagagaatatttttatggtatatcaggtgattta
tgtccacattttactattttggatttcaaagatatagttgttttaaaaacaggtggtggt
ccagcagctccatcttcagcactaccaattggtgctcaatcagtgattgatccacttcaa
ttacaagaagttacaccatcgaccgatatgatccattcaatcctcgcagtttcctatacc
aaatcaaaacaaagtattttaaagagtaatattgccggatttttatatgtcactgaggtc
aaccttgaaactaaaaaaatgaccgtattggctccttgtccaggtttaatcccttcaaaa
ttcttattaatgggtacattaaaatggttagaataa
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