Dickeya lacustris: O1Q98_10580
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Entry
O1Q98_10580 CDS
T08984
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
dlc
Dickeya lacustris
Pathway
dlc00540
Lipopolysaccharide biosynthesis
dlc01100
Metabolic pathways
dlc01250
Biosynthesis of nucleotide sugars
Module
dlc_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
dlc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
O1Q98_10580 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
dlc01005
]
O1Q98_10580 (rfaD)
Enzymes [BR:
dlc01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
O1Q98_10580 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
dlc01005
]
Core region
O1Q98_10580 (rfaD)
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GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
ThiF
NAD_binding_10
KR
adh_short
Motif
Other DBs
NCBI-ProteinID:
WFN54151
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Position
2331123..2332055
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AA seq
310 aa
AA seq
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MIIVTGGAGFIGSNIVKALNDAGHRDILVVDNLKDGTKFANLVDLDIADYMDKEDFIASI
VAGDDLGDIDAIFHEGACSSTTEWDGKYMMDNNYQYSKEVLHYCLERGIPFLYASSAATY
GGRTDNFIEDRQYEQPLNVYGYSKFLFDQYVREILPQAESQICGFRYFNVYGPRESHKGS
MASVAFHLNTQLNQGEKPKLFSGSENFKRDFVYVGDVAAVNLWFWQHGVSGIFNCGTGRA
ESFQAVADAVLAWHKQDSVEYIPFPDKLKGRYQAYTQADLSKLRAAGYDKPFKTVAQGVT
EYLAWLNRSV
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgattatcgtgactggcggtgccggtttcatcggcagcaatatcgtgaaggcgctcaat
gacgccggacaccgggatattctggtggtcgataacctcaaagatggcaccaaattcgcc
aacctggttgatctggacattgccgattacatggacaaggaagattttattgccagtatc
gttgccggtgacgatctgggcgatattgacgcgattttccatgaaggtgcctgttcatcc
accaccgagtgggatggcaaatacatgatggataacaactatcagtattcaaaagaggtg
ctgcactactgtcttgagcgcggtattccattcctgtacgcctcctctgcggcaacctac
ggtggccgtaccgataatttcattgaagatcgccagtacgaacagccgcttaatgtgtac
ggctactccaaattcctgtttgaccagtatgtgcgtgagattctgccgcaggctgagtca
cagatttgcggcttccgttatttcaatgtctacgggccgcgtgaaagtcacaaaggcagc
atggcgagcgtggctttccacctcaatacccaactgaatcagggcgaaaagccgaaactg
ttcagcggcagcgaaaacttcaagcgtgatttcgtttatgtcggcgatgtggcagcggtg
aatctgtggttctggcagcacggtgtctccggcattttcaactgtggcactggccgcgcc
gagtcgttccaggccgttgccgatgcggtactggcctggcacaagcaagacagcgtcgaa
tacatcccgttcccggacaaactgaaaggccgctatcaggcatatacccaggccgacctc
agcaaattacgggctgccggttatgacaagccgttcaaaaccgtcgcccaaggggtgact
gaataccttgcctggcttaaccgcagcgtttga
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