Daphnia magna (water flea): 116917654 Help Entry 116917654         CDS       T07514                                  Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism dmk  Daphnia magna (water flea) Pathway dmk03030   DNA replication dmk03410   Base excision repair dmk03420   Nucleotide excision repair dmk03430   Mismatch repair Brite KEGG Orthology (KO) [BR:dmk00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     116917654    03410 Base excision repair     116917654    03420 Nucleotide excision repair     116917654    03430 Mismatch repair     116917654  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:dmk03032]     116917654    03400 DNA repair and recombination proteins [BR:dmk03400]     116917654 Enzymes [BR:dmk01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      116917654     6.5.1.6  DNA ligase (ATP or NAD+)      116917654     6.5.1.7  DNA ligase (ATP, ADP or GTP)      116917654 DNA replication proteins [BR:dmk03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     116917654  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      116917654 DNA repair and recombination proteins [BR:dmk03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      116917654    NER (nucleotide excision repair)     Other NER factors      116917654    MMR (mismatch excision repair)     Other MMR factors      116917654 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C FERM_N_2 Motif Other DBs NCBI-GeneID:  116917654 NCBI-ProteinID:  XP_032779095 LinkDB All DBs Position LG2:3338107..3348094 Genome browser AA seq 827 aa AA seqDB search MAYAPKSITTEKQEMEQQGQRLITSFFSKPRLTSSAEVVKGKEKSEEVRCTDEASVLPGI KSSASDSPAKTANKKVKALESDDEAPVSRKNKRRKCAVSSSDESEPEIRTIRKKMTPKLK SPNQLSGSTNDNSTTSFKKKEDSKLNKKSVLLVGTEDTSDSKDEIKLGNHEYYNPGKNSY HPLKDSTWKMGENVPYMALAKTLELIEETSSRLKMIEILANYFRSVFLLSPNDLLCSVYL CLNQLAPAYIGLELGVGEGIIIKAIAQATGRTADKVKADVSAKGDVGLVAEASKSTQRTL SMFRPAILTVNSVFTKLTEVAVMTGNSSQTKKVDKIHGLLVAAKQLEARFIARSLAGKLR IGLAEQSLLQALAFAASATPPNQPSPPTQLNCFQGLSTEAIKAKVETAAVILKTAYCQCP SYDRIIPVLLREGIAALPLHCTLTPGVPLKPMLACPTRGVGEVLQKFESTKFTCEWKYDG ERAQIHLLENGEVRIYSRNQENNTSKYPDIISRFQSWIAPSASVRSAIIDSEAVAWDTEK KTILPFQILSTRKRKDAVEADIKVQVCVFAFDLLFINGESLVEMPLIERRQKLWNSFHRV GGQFDFATSRDPQSIEEIEEFLDESLKGNCEGLMVKGLVKDATYEIAKRSKNWLKLKKDY LEGVGDTIDAVVIGGYLGRGKRTGLYGGFLLACYDENNEDYQSLCKIGTGFSDEDFQTHS DFLKNHIIQKPKPYYRFDQTLSPDHWFEPVQVWEIKCADLSISPVHRAAVGIIDPVKGIS LRFPRFIRIRPDKNPENATSAEQIADLYKSQDQIKNRKIEEEEEGFY NT seq 2484 nt NT seq  +upstreamnt  +downstreamnt atggcttacgcgccaaaatctatcacaacagaaaaacaagaaatggagcaacaaggacag cgtctaataacatcttttttttcgaaaccacgtttaacatcttctgcagaagtcgttaaa ggaaaagaaaagagcgaagaagtgcgatgcactgatgaagcatctgtgttgccggggatt aaaagttctgccagtgacagtccagccaaaacagccaacaaaaaagtaaaagcacttgaa agtgatgatgaagctcctgtttctcgaaaaaataagaggagaaaatgtgctgtaagcagc agtgatgaatcagaaccagaaataaggactataagaaaaaaaatgacaccaaaacttaaa tcaccaaaccaattatcaggatctactaatgacaatagtactacatcttttaagaaaaag gaggactctaagttaaataagaaaagtgttctactagtaggcacagaagatacaagtgat tcaaaggatgaaatcaagttagggaaccacgagtactataatcctggcaagaacagttat catcctctaaaagattcaacatggaaaatgggtgaaaacgtaccatacatggccttagct aaaacactggaacttattgaagaaactagctccaggttgaaaatgattgaaattttggca aactacttcagaagtgtttttcttttgtcaccaaatgatttgttgtgctctgtttattta tgtttaaatcaattagcacctgcatatattggcttggagcttggagtaggtgaaggtata atcattaaagctattgcacaagctacaggaagaacagcagacaaagttaaagctgatgta tcagctaaaggagatgtgggtttagtagcagaggcatcaaaaagcacgcaaagaactctt tcaatgttcaggccagctattttaacagtgaatagcgtattcactaaactgaccgaagta gctgtgatgacaggaaatagttcccagacgaagaaagtagataagattcatgggttactc gttgctgcaaagcaattagaagcccgtttcatagcacgatcgctggctggcaagctacga attgggttggctgaacagtctcttcttcaagctttagcttttgcagcttccgcaactccc ccaaatcagccttcaccgcctacccaactgaactgttttcaggggcttagcactgaagcc attaaagccaaagtagaaactgcagcagtcattttaaagacagcatattgccaatgccct agctacgatcgaatcataccggttcttttacgggaaggcatagcagcgctcccactgcat tgtaccctaactccaggagttccattaaaacccatgttggcgtgtcctacaagaggtgtc ggggaagtactacagaagtttgaatctaccaagttcacctgtgagtggaaatatgatggt gaaagagcgcagatacacctcctcgagaatggtgaagtcagaatttacagcaggaaccaa gaaaataacacctcaaaataccccgacataatcagtcgctttcagtcttggattgctccg tcagcttccgttcgatctgccattattgattctgaagctgtagcttgggatacagagaag aaaacaatccttccgtttcaaattctttcaacgagaaaacgaaaagatgctgtagaagca gacattaaagttcaagtttgcgtattcgcatttgatttgttgttcatcaacggagagtcc cttgtcgaaatgccgctaatagaacgtcgacaaaagctttggaattcttttcatagagtt ggtggtcagtttgattttgcaactagcagagatcctcaatcaattgaggaaatcgaagaa ttcttggacgaatcgttgaaaggcaattgtgaagggctgatggttaaaggtttggttaag gacgcgacatatgagatagccaagagatcaaaaaattggttaaaactaaagaaagactac ttggaaggagttggtgatactatcgatgctgtcgtaattggaggatatttaggcagaggc aaacgaactggtctttacggaggctttttactggcatgctacgatgaaaataatgaagat taccagtcactttgtaaaattggtacaggatttagtgatgaagattttcagacccacagt gattttcttaaaaaccacataattcaaaagccaaaaccctactaccggtttgaccaaacg ttatcacccgatcattggtttgaacccgttcaagtgtgggaaattaaatgcgctgacttg tccatttcgccagtacatagagccgcagtcggaataattgatcctgttaaaggaatttct ttgagatttcctcgttttataagaatacgaccggacaagaatccggagaatgctacatca gccgaacagattgccgatctttacaagagccaggaccagataaaaaatcggaaaatagag gaggaggaagagggcttttattga

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