Dipodomys ordii (Ord's kangaroo rat): 106000222
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Entry
106000222 CDS
T07834
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
dord
Dipodomys ordii (Ord's kangaroo rat)
Pathway
dord03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dord00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106000222 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dord03021
]
106000222 (Polr1a)
Enzymes [BR:
dord01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106000222 (Polr1a)
Transcription machinery [BR:
dord03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
106000222 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
106000222
NCBI-ProteinID:
XP_012890913
Ensembl:
ENSDORG00000008298
UniProt:
A0A1S3GPV3
LinkDB
All DBs
Position
Unknown
AA seq
1712 aa
AA seq
DB search
MLVSKNLPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSGNGLYDLALGPADS
KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
VCQLRVLEVGALQAVYELERILNRFLEENADPSATEIQEELEEYTTQILQNNLLGSQGAH
VKNVCESRSKLIAYFWKTHMTAKRCPHCKTGRSLVRKEHNSKLTVMYPAVVHKKSDQKDT
EDPASGIEEAQMGKRGYLTPSSAEEHLFAIWKNEGFFLNYLFSGLAVGTEARFNPSIFFL
DFVVVPPSRYRPVNRLGDQMFTNGQTVNLQAVIKDVVLIRKLLALMAQEQKLPCEVVALT
TDKENDSSIAMDRSFLSMLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMMEKYPGIRQ
ILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQE
LRQAVINGPNVHPGASMVINEDGSRTALSSVDITQREAVAKQLLTPATGALKPQGTKIVC
RHIKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP
QSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYR
GLTDKVGRVKLLPPAILKPFSLWTGKQVVSTLLINIIPDDYIPLNLTGKAKISGKAWVKE
TPRPVPDFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLT
CLARLFTAYLQLYRGFTLDVEDILVKPKADVKRQQIIEESTHCGPRAVRVALNLPEAASC
DEVRGKWQDAHLGKDQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQ
SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI
RPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLY
GEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKALRHFRAIKKWHSKH
STAQLRKGAFLNYSQKMQAAVKALNLEGKNQNGRSPETQQMLQMWYELDEQSRWKYQKKA
ASCPDPSLSVWRPDIYFASVSETFEKKMDDYSQEWAAQAEKNYMKSELSLDRLRTLLQLK
WQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANI
KTPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLQKVDVQESFCMGEKQNKFRVYELRF
EFLPHAYYQQEKCLRPEDILHFMETRFFKLLMECIRKKSSKESTFRSVNTRRATQKDLDN
AEESGRARGEQEGDEEEEGNIVDAEADEGDTDASDTKRKEKQEEEVDYESEEEEEKEEEE
EETPEEGNIHGEGGALQAHGSDEEVGSGLEEDLPQKPPRHHRGPQGAEAVQRRVQAVREA
HSFIEDYQYDTKEGLWCQVTMKLPLMKINFDMSSLVVSLAHSAIVYTTKGITRCLLNETT
NSENEKELVLNTEGINLPELFRYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDV
FAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSSSSPLQQMTFETSFQFLKQATMMG
SHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgctggtctccaagaacctgccttggcggcggctgcaaggcatttccttcggcatgtat
tcggctgaggagctcaagaaattaagtgttaaatccattacgaaccctcgttatgtggac
agtctaggaaacccatccggaaatggtctctatgatttagccttgggccctgcagattcc
aaggaagtgtgctccacctgcgtgcaggacttcagcaactgctctgggcacctgggccac
attgagcttccactgacagtgtataaccctctcctctttgataaactctacctgttgctc
cgaggctcctgtttaaattgccacatgctgacttgtccccgggctgtaattcacctgttg
gtctgccagctaagggttctggaagttggggccctacaagcagtctatgagcttgaacga
attctgaacaggtttctggaagaaaatgctgatccttctgccactgaaattcaggaagag
ttagaagaatacacaacccaaattctgcagaacaaccttttggggtcccaaggtgcacat
gtaaaaaatgtgtgtgagagcaggagcaaactcattgcttacttctggaagacacatatg
actgctaagcgatgtccccactgcaagactgggcggtcacttgtccgaaaggagcacaac
agtaagctgacagtcatgtacccagctgtggtgcacaagaaatctgaccagaaggacaca
gaggatccagcttcaggaattgaggaagctcagatgggaaagcgagggtatttaacacct
agcagtgccgaagaacatctttttgccatttggaagaatgaaggattctttttgaattac
ctcttttctggacttgctgtgggcacagaagcgagattcaatcccagtatattttttctt
gattttgtggtggtgccgccctccaggtatcgtcctgtcaatcgcctgggggaccaaatg
tttaccaatggccagactgtgaacctacaagctgtcataaaagatgtagttctaatccgg
aaacttctggcattgatggcccaagaacagaagctgccctgtgaggtggtagcactcacc
acagacaaggaaaatgactcttcaattgctatggaccgatcctttttaagtatgcttcca
ggccagtctctcacagacaaactttataacatttggattcgacttcagagccatgtcaat
atcgtgtttgatagcgagatggataaattaatgatggaaaagtaccctggcattagacag
atcctggagaagaaggaaggacttttccgaaagcatatgatgggaaagcgagtagattat
gcagcacgctcagtcatctgcccagatatgtacatcaacaccaatgaaattggcattccc
atggtgtttgccacaaaattgacctaccctcagccagttaccccctggaatgtccaggaa
ttgaggcaagcagtcattaatggccccaatgtgcatccaggagcctccatggtcatcaac
gaggatggcagtcgcacagctctaagctctgtggacataacccagcgggaagctgtggct
aaacagcttctgacaccagccacgggggccctgaagccccaggggacaaaaattgtttgc
cggcacataaagaatggagacattcttctactgaaccgacagcccaccctgcacagacca
tccatccaggcccaccatgctcgtatcctacctgaagagaaagtccttcggctccactat
gccaactgcaaggcctataatgctgactttgatggagatgagatgaacgcccacttccct
cagagtgagctgggtcgggcagaggcctatgtcctggcctgtactgatcaacagtacctt
gttcccaaggatggccagccactggcaggactgatccaagatcacatggtttcaggtgca
aacatgactattcggggttgctttttcacccgagaacagtatatggagctggtataccga
ggactcacagacaaagtaggacgcgtgaagctccttcctcctgccattctgaagcccttt
tcactgtggactggaaagcaggttgtatcaacactgctcataaacataatcccagacgac
tacattccactgaacttaactggaaaggctaaaatcagtgggaaagcctgggtgaaagaa
actcctcggcctgttcctgactttaaccctgactccatgtgtgagtctcaggtgatcatc
agggaaggggagctgctctgtggagtgctggacaaggcgcactatgggagctctgcctac
ggcctagtccactgctgctatgagatctatgggggtgagaccagtggcaaggttcttact
tgcttggctcgtctcttcactgcctaccttcagctctacagaggatttaccttggatgtg
gaagacattttggttaagccaaaggcagatgttaagagacagcagatcattgaagaatcc
actcactgcggacctcgggctgtcagggttgcgttgaacctaccagaagctgcatcatgt
gatgaggtccgtgggaaatggcaggatgcacatcttggcaaagaccagcgggattttaac
atgattgatatgaagttcaaggaggaagtgaaccattacagcaatgagattaacaaggca
tgcatgccttttggcctgcacagacagtttccggagaacaacctacagatgatggtgcag
tctggagccaaaggttcaactgtgaacacgatgcagatctcttgcctgctgggtcagatt
gagttggaaggtcggagacctccactgatggcgtctggcaaatcattgccctgctttgaa
ccttatgaattcacccccagggctggtggctttgtcactggaaggtttctcacaggtatt
agacctccggagttcttctttcactgcatggcagggcgagagggcctggtagatactgct
gtgaaaaccagccgttctggctatctccaaaggtgtatcatcaagcacttggaaggcctt
gttgtccagtatgatctgacagtccgtgacagcgatggcagcgtggtgcagttcctatat
ggggaagatggcctggatatccccaagacgcagttcttgcagcccaagcagtttcccttc
ctggccagcaactatgaggtgataatgaaatcaaagcatctccatgaagttttgtccaga
gcagatcctcagaaagctctccgtcacttcagagccattaaaaaatggcacagcaagcat
tccactgcccagctaaggaaaggtgccttcctgaattactcccaaaagatgcaggcagct
gtgaaagccttgaacctcgagggcaagaaccagaatggccgcagcccagaaactcaacag
atgttacagatgtggtatgagttagatgaacagagccggtggaaataccagaagaaagca
gcctcttgtcctgaccccagtctgtctgtgtggcgcccggacatctactttgcatctgtc
tcagaaacatttgaaaaaaagatggatgactacagtcaagaatgggcagctcaagcagag
aagaattacatgaaatcagagctttctctcgacaggctgagaaccttgctgcagctaaaa
tggcagcgctcactgtgcgacccaggcgaggctgtgggactgctggctgcccagagcatt
ggggagccctccacacagatgactctgaacaccttccacttcgcaggcagaggcgagatg
aacgtcaccctgggtattccaaggttaagggagattctcatggtggctagtgccaacatc
aagacacccatgatgagtgtccccgtcttcaacaccaagaaagccctgaagagagtgaag
agcctgaagaagcagctcaccagggtgtgcctaggggaggtgttgcagaaagttgatgtc
caggagtccttctgcatgggggaaaaacagaacaaattccgggtgtatgagctgaggttt
gagttcctgccgcatgcctattaccaacaggagaagtgcctgagacctgaggacatcctg
catttcatggaaacaagattctttaaactcctgatggagtgcatcagaaagaagagtagt
aaagaatcgaccttcagaagtgtgaacacacgaagagctacacagaaggatcttgataat
gctgaggagtcagggagggctcggggagaacaggaaggtgatgaagaagaagaggggaac
attgtggatgctgaagctgatgagggggatactgatgcctctgacactaaacgcaaggag
aagcaagaggaagaggtggattatgagagcgaggaagaggaagagaaggaagaggaggag
gaggaaacaccagaagaagggaacatccatggtgaaggtggtgcccttcaggcccatggt
tcagatgaggaagtgggctcaggcctggaagaagacttgccccagaaacctccccgccac
caccggggaccccagggagctgaggctgtgcagcgccgggtccaggctgtgcgtgaggcc
cattcattcattgaagactaccagtatgacaccaaagaaggactgtggtgccaggtgacg
atgaagctccctctgatgaagattaactttgacatgagctccctggtggtgtccttggcc
cacagtgccattgtttacacaaccaagggcatcactcggtgcctcctgaatgaaacaacc
aacagtgagaatgagaaggagcttgtgctgaacacagaaggaatcaacctccccgagctg
ttcagatatgctgaggtgctggacctgcgccgcctctactccaatgacatccatgccatg
gctaacacttacggcatcgaggcagcactgcgggttatcgagaaggagatcaaggatgtg
tttgccgtgtatggcattgcagttgatcctcgccatctctccttggttgctgattatatg
tgttttgagggtgtttacaagccactgaatcgcttcgggatccggtccagctcctcccct
ctgcagcagatgacgtttgaaaccagcttccagtttctgaagcaggccaccatgatggga
tcccacgacgaactgaggtccccttcagcctgccttgtggtggggaaagttgtcaagggg
ggaactggcctgtttgaactcaagcagcccctgagatag
DBGET
integrated database retrieval system
