Oryza sativa japonica (Japanese rice) (RAPDB): Os02t0217500-01
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Entry
Os02t0217500-01 CDS
T02163
Symbol
Os02g0217500
Name
(RAP-DB) Pre-mRNA cleavage complex II Clp1 family protein.
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os02t0217500-01 (Os02g0217500)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os02t0217500-01 (Os02g0217500)
Enzymes [BR:
dosa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
Os02t0217500-01 (Os02g0217500)
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
Os02t0217500-01 (Os02g0217500)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
AAA_22
CbiA
ATP_bind_1
ABC_tran
SRPRB
AAA_29
AAA_24
MMR_HSR1
GTP_EFTU
MobB
Motif
Other DBs
RAP-DB:
Os02t0217500-01
LinkDB
All DBs
Position
chr02:join(6568262..6568450,6568585..6568653,6568769..6568870,6569286..6569527,6569957..6570095,6570198..6570251,6570735..6570872,6571215..6571447,6572104..6572148,6572231..6572318)
AA seq
432 aa
AA seq
DB search
MAAAGGAAQPPRQYKLAPQSELRVEVPPDAPVRVRLVAGTAEVFGTELPPEGWVPVPPRS
KIAIFTWHGATVELDGVSESEYTSDETPMVVYVNTHAILDARRARARAAAAQGALPESSQ
GPRVIIVGPSDSGKSTLCKMLLSWAAKQGWKPTYVDLDIGQGSITIPGCISATPIEKPID
IVDGIPLEMPLAYFYGHPSPSVSPDVYRALMKELAQTLDKQFSGNSESRAAGMIINTMGW
VENLGLELLHNSIEIFKANVILVLGQEKLWKMLKDAAKNKPNIDVVKLHKSEGVVPRNPK
YRQKTRSFRIKEYFYGIANDLAPHSNVVNFSDVSVYKIGTHQAPKSALPIGAEPVADPTR
LVAVNISTDMVHTVLAVSYAKEPDEIVSSNVAGFIHVTDVDIQRKKLTYIAPCPGDLPSK
LLIASSLTWYEA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgggcggggccgcgcagccgccgcggcagtacaagctggcgccgcagagc
gagctgcgggtggaggtgccccccgacgcgcccgtccgcgtccgcctcgtcgccggcacg
gcggaggtcttcggcaccgagctcccccccgagggctgggtccccgtcccgccccgctcc
aagatcgccattttcacctggcacggcgcgacggtggagctggacggggtcagcgagagc
gagtacacgtccgacgagacaccgatggtggtttatgtgaacacccacgcgatccttgac
gcgaggagggcgagggcgagggccgccgcggctcagggtgccctgccggagtcctcgcag
ggacccagagtgatcattgtggggccaagtgattctggaaaaagtactttgtgcaaaatg
ctccttagctgggctgccaagcagggctggaagcctacatatgtggatttagatattggc
caaggttcgataaccatacctggatgtatttcggcaacacccattgagaagcctatagat
atagttgatgggattcccttggagatgccgcttgcatacttttacggccatccaagccca
agtgttagtccagatgtttacagagctcttatgaaggagctagctcagacattggataaa
caattctctggaaattctgaatctagggcagcaggaatgattatcaatactatggggtgg
gttgaaaaccttggtttagagttacttcacaattcaattgagattttcaaggctaatgta
atattggtattgggacaggagaaactatggaagatgctaaaagatgcagcaaaaaataag
cccaacattgatgttgtaaaacttcataaatcagaaggtgttgttccgagaaatccaaag
taccgtcaaaagactagaagcttccgtatcaaggagtacttttatggcattgcgaatgat
ctagcaccacactcaaatgttgttaacttcagtgatgtatctgtttacaagattggcact
catcaagctcctaagtctgcactaccgattggtgcagagcctgtggcagaccctactcga
cttgttgctgttaacatcagcacagatatggtccacaccgtgcttgctgtttcatatgct
aaggaacctgatgaaatagtttccagcaatgttgccggattcatccacgtgacagatgtt
gacatccaaaggaagaagctcacatacattgcaccatgcccaggggacctgccaagtaag
ctgttaattgcgagctcgttaacgtggtacgaggcttga
DBGET
integrated database retrieval system
