KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os03t0858100-01
Entry
Os03t0858100-01   CDS       T02163                                 
Symbol
Os03g0858100
Name
(RAP-DB) Similar to CRM1 protein (Fragment).
  KO
K14290  exportin-1
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03008  Ribosome biogenesis in eukaryotes
dosa03013  Nucleocytoplasmic transport
dosa03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    Os03t0858100-01 (Os03g0858100)
   03008 Ribosome biogenesis in eukaryotes
    Os03t0858100-01 (Os03g0858100)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    Os03t0858100-01 (Os03g0858100)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os03t0858100-01 (Os03g0858100)
   03009 Ribosome biogenesis [BR:dosa03009]
    Os03t0858100-01 (Os03g0858100)
   03016 Transfer RNA biogenesis [BR:dosa03016]
    Os03t0858100-01 (Os03g0858100)
   03036 Chromosome and associated proteins [BR:dosa03036]
    Os03t0858100-01 (Os03g0858100)
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     Os03t0858100-01 (Os03g0858100)
Ribosome biogenesis [BR:dosa03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    Os03t0858100-01 (Os03g0858100)
  Pre-60S particles
    Os03t0858100-01 (Os03g0858100)
Transfer RNA biogenesis [BR:dosa03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    Os03t0858100-01 (Os03g0858100)
Chromosome and associated proteins [BR:dosa03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     Os03t0858100-01 (Os03g0858100)
SSDB
Motif
Pfam: CRM1_C Xpo1 CRM1_repeat_2 CRM1_repeat_3 IBN_N CRM1_repeat DUF3385
Other DBs
RAP-DB: Os03t0858100-01
LinkDB
Position
chr03:complement(join(36222802..36222897,36222252..36222368,36221205..36221297,36221032..36221103,36220813..36220920,36220663..36220745,36220384..36220522,36220226..36220294,36219920..36219997,36219750..36219809,36219594..36219638,36219208..36219315,36219030..36219125,36218661..36218861,36218470..36218529,36217971..36218081,36217737..36217834,36217552..36217660,36217230..36217295,36216956..36217054,36216784..36216864,36216612..36216701,36215930..36216015,36215315..36215395,36215036..36215218,36214807..36214873,36214610..36214720,36214374..36214481,36214156..36214293,36213947..36214078,36213771..36213875,36213206..36213328))
AA seq 1070 aa
MAEKLRDLSQPIDVPLLDATVAAFYGTGSKEERNAADQILRDLQNNPDMWLQVVHILQNS
HNLNTKFFALQVLESVIKYRWNALPTEQRDGIKNYISDVIVQLSSNEASFRQERLYVNKL
NIILVQVLKHEWPARWSSFVPDLVAAAKSSETICENCMAILKLLSEEIFDFSRGEMTQQK
IKELKSSLNSEFRLIHELCLYVLSATQRPELIRATLATLHAFLSWIPVGFIFESPLLETL
LKFFPMAAYRNLTLQCLTEVAALQFGDFYNVQYVKMYTIFMMQLQAILPPGTIPDAYANG
SSEEQAFIQNLALFFTSFFKNHMRILEASPENRAALLLGLEYLIGISYVDDTEVFKVCLD
YWNVFVLELFEAHNQMEPAASVNMMGLQAQMLPGVDGTITAVQQRRQLYSGPLSKLRMLM
ICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEQQMLKKL
SKQLNGEDWSWNNLNTLCWAIGSISGSMVEEQENRFLVMVIRDLLNLCEITKGKDNKAVI
ASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHEMHPGVQDMACDTFLKIVQKCKRKFV
TQQVGENEPFVSELLSSLATTIGDLEPHQIHTFYESVGHMIQAESDNTKRDEYLKRLMSL
PNQKWAEIIGQASQSIDILKNQDVIRSVLNILQTNTSVASSLGPHFFPQISLIFLDMLTV
YRMYSELVSSTIAEGGPFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHIGKQFVPPM
MDPILADYARNVPDARESEVLSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFED
YPEHRLKFFSLLRAIGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEI
LKNFQASGFQNQFYKTYFLNIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCVVDGLTEPLW
DASSVPYQYTDNAMFVRDYTIKLLGSSFPNMTPTEVTKFVDGLLSSKHDLPSFKNHIRDF
LVQSKEFSAQDNKDLYAEEAAAQRERERQRMLAIPGLIAPSELQDEMVDS
NT seq 3213 nt   +upstreamnt  +downstreamnt
atggcggagaagctgagggatctgagccagcccatagacgtcccgctgctggacgccact
gtcgccgccttctacggcaccggatctaaggaagagaggaatgccgctgatcagatacta
cgggatctacagaataatccagatatgtggctgcaggtggtccacattctgcagaattct
cacaacttgaacaccaagttctttgccctccaagtacttgaaagtgttataaagtatagg
tggaatgcattgccaactgaacaacgtgatggcatcaagaattacatatctgatgttatt
gtccagctctccagtaatgaggcttcttttcggcaagagagactttatgttaataaactc
aacattatactggtgcaggttctgaagcatgagtggccagctaggtggtcatctttcgtt
cctgaccttgttgctgctgcaaagagtagtgaaaccatatgcgaaaattgcatggctata
ttgaagcttttaagcgaagaaatttttgatttttcaagaggtgaaatgacacaacagaag
attaaagaactgaagtcatcacttaacagtgaatttcgtcttattcatgagctatgttta
tatgtcctatctgcaacacaaagacctgagctcatccgtgctacactggctacacttcat
gctttcttatcatggataccagtgggcttcatatttgagtcacctttgctggagacatta
ctgaagttctttcctatggctgcttatcggaaccttacactccagtgccttacagaggtc
gctgctcttcagtttggtgatttttataatgtgcagtatgtgaagatgtatacgattttc
atgatgcagttgcaggctattcttcctcctggaacaattcctgatgcttatgctaatggc
tccagtgaagaacaggcattcatacaaaatctagctctttttttcacttctttcttcaag
aatcacatgcgcatattggaggcatctccagaaaatagagctgcattacttctgggcctt
gagtacctcattggaatttcatatgttgatgacacagaggtttttaaggtgtgtttggat
tactggaatgtgtttgttttagagctatttgaagcacacaatcaaatggagcctgcagca
tctgtaaacatgatgggacttcaggctcagatgctccctggagttgatggcaccatcaca
gctgttcagcagaggcgtcagctttactcaggcccactatcaaaattacgaatgttgatg
atttgtcggatggcaaaaccagaggaggtactgattgtggaagatgaaaatgggaatatt
gtacgtgaaacaatgaaagacaacgatgttcttgtccagtataagattatgagggaaaca
ctgatctacttgtctcatcttgatcatgaggatacagagcagcaaatgctgaagaaattg
agtaagcaattaaatggagaagactggagttggaataacctcaatactctctgctgggca
atcggatcaatatctggttctatggtggaggaacaggaaaataggttcttggtaatggtt
attcgcgatttattaaatctctgtgaaatcacaaaggggaaggataataaagctgtgatt
gccagtaacatcatgtatgttgttggtcagtacccaagatttctcagggctcattggaag
ttcttgaaaacggtggttaacaaactatttgagttcatgcatgagatgcatcctggagtt
caggatatggcgtgtgatacttttctgaaaattgttcagaaatgcaagcgcaaatttgtc
acacaacaggtgggcgagaacgaaccatttgtttctgaactgttgtccagccttgccacg
acaattggtgatcttgagccgcaccagattcatacgttttatgaatcggttggccacatg
attcaagctgaatctgataacactaagagagatgaatacctcaaaagactgatgagcctc
cctaatcagaaatgggccgagataattggacaggcaagccaaagcattgatatcctgaag
aaccaggatgttattagatctgttcttaacatcctgcagacaaacacaagtgttgctagc
tcacttggaccacactttttcccgcaaatttccctaatctttcttgacatgttgacagtt
tacagaatgtacagtgagcttgtatcaagcaccattgctgaagggggaccttttgcctca
aggacctcctttgtaaaactccttagatctgtcaagagggaaacattgaaattgattgag
acttttgtggacaaagctgaagatctaccacacattgggaaacagtttgttcctcctatg
atggatcctattcttgctgactatgctagaaatgttcccgatgctagggaatctgaagtt
ctgtccctgtttgcgacgatcataaacaaatacaaaggtgaaatgcttgaagacgtgcct
cgcatatttgaggctgttttccagtgcactcttgagatgatcactaaaaactttgaagat
tacccggagcatcgcctcaaatttttctctttgcttcgtgcgattggcacccattgcttc
caagcattaattcagctttcaagtcagcaattgaaacttgtgattgactctatcaactgg
gcatttagacatacagagagaaacatcgcagagactggtctcagtctattgctggaaatt
ttaaagaactttcaggcctcaggattccaaaatcaattctacaaaacttattttttgaat
attgaacaagagatctttgcagttctgacagacacattccacaagcctggtttcaagctt
catgttttggtgctgcagcacttattttgtgtggttgatggtctgacggagcctctctgg
gatgcatcctcagtaccataccaatatactgacaacgctatgtttgtccgagattacaca
ataaaacttttaggttcatcatttcccaacatgacacctactgaggttacaaaatttgtt
gatgggcttcttagttcaaaacatgaccttccaagcttcaaaaaccatattagggatttc
ctggtgcaatcaaaggagttctcggctcaggataataaggatttgtatgctgaagaggct
gctgcacaaagagagagggagcgtcaacgaatgcttgccattccagggcttattgcccca
agcgaattacaagatgagatggttgattcataa

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