Oryza sativa japonica (Japanese rice) (RAPDB): Os04t0434300-01
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Entry
Os04t0434300-01 CDS
T02163
Symbol
Os04g0434300
Name
(RAP-DB) MiaB-like tRNA modifying enzyme, archaeal-type domain containing protein.
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dosa03016
]
Os04t0434300-01 (Os04g0434300)
Enzymes [BR:
dosa01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
Os04t0434300-01 (Os04g0434300)
Transfer RNA biogenesis [BR:
dosa03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
Os04t0434300-01 (Os04g0434300)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
DUF6666
Motif
Other DBs
RAP-DB:
Os04t0434300-01
LinkDB
All DBs
Position
chr04:complement(join(21595064..21595222,21594933..21594971,21594573..21594664,21594004..21594253,21593734..21593853,21593573..21593648,21593268..21593476,21593035..21593143,21592805..21592897,21592552..21592712,21591887..21592444))
AA seq
621 aa
AA seq
DB search
IEDVLGPAGIAGGGAAPGLRLPLAAVAVKPKRPRSSRVAQTRPQPEARIPGTQTIYVKTF
GCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANK
PLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLLSRKTLPSLDLPK
VRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSE
DTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYS
FLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQ
TVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGK
VERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVIEGSV
VAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNPGPERSENSTPQSC
GDATHQEAVQSKLVRRNVEGAVKSSESDTAKQVGEIQRLNVAARRFPDVDTILWGGLAVS
FATTVTLIALLAYKISSTPSY
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atcgaggacgtgctggggccggccgggatcgccggcggcggggcggctccggggctccgt
ctcccgctcgccgccgtcgccgtgaagcccaagcgtccgagatcgtccagggtcgcgcag
acccggccgcagcccgaggcccggatccccgggacgcagacgatatatgtgaagacgttc
gggtgctcgcataaccagagtgacagtgagtacatgtcagggcagctgtcagcgtttgga
tatgcgatcactgaagagcccgaaggagcggatttgtggctaattaacacatgcactgtg
aaaaacccaagtcagtctgccatgacaactctcatatcgaagtgcaagagtgcaaacaag
cctttggttgtggctggatgtgtaccacaaggaagccgggatctgaaagagcttgaaggt
attagcgttattggagtgcaacagattgaccgcgttgttgaagttgttgaagaaacctta
aaaggccatgaggttcggttgttgagtcggaaaacactgccctcacttgatttacctaag
gtaaggaagaacaaatttatcgagattcttcctattaatgttgggtgtttgggtgcttgc
acatactgcaagacaaagcatgctcgtggtcatcttggaagctatactatagaaagtttg
gtagatcgtgtgaaaattgttgtctctgaaggtgtccgagaaatatggttgagtagtgag
gatactggtgcttatggcagggatatcggtacaaatcttccaaatctattaaatggaatt
gctgctgagcttcctgcggacagaagcacgatgcttcgcattggcatgaccaatcctcct
ttcatattggagcatttgaaggagattgctagtgttttgtgccatccctgtgtttattct
ttcctccacgttcctgtacaatcaggaagtgatgcagttttaacggcaatgaatcgtgaa
tacactgtgagtgaattcaggagggtagttgacactctttgtgagcttgtccctggaatg
caaattgctacagatattatttgtggattccccggtgagactgatgaggatttctctcaa
actgttaaccttgtaaaacaatatctattccctcaggttcacatatcacaattctacccc
agaccaggaacacctgctgctaggatgaaaaaggttccaagcgttgaagtgaagaaaagg
agccgtgaattgacctcagttttcgagtcattttcaccctaccaaggaatggaaggcaaa
gtagagaggatatggatcactgaaatagctactgatggtgttcatttggttggacatacc
aaaggatatatccaggtgcttgtcattgctcctgatagcatgttaggaacatcagcagat
gtgaagatcacatctgttgggagatggtctgtgtttggtgaagtgatagaaggatccgtt
gtagcaaaggaaacacagaagcataatcacagtgaactgcaagaagaatacaggccaagt
caggttgaggaagccacttgctgcggcacggactcttgtggtgcctgcacatgctctgat
gcagcacagcaatgcaatcccggtccagagcgatccgaaaattcgacgccccaatcctgt
ggtgatgctactcatcaggaagctgttcagtctaaacttgtgagaagaaatgttgaagga
gcggtgaaaagtagcgaaagtgatacagcgaaacaggtaggggagattcagcgactaaat
gtagcagctaggaggttcccagatgttgatacgattctgtggggtggtttggccgtgagc
tttgccacgacagtaaccctcattgcactgctagcttacaagatttcttccacgccctcc
tactag
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integrated database retrieval system
