KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os09t0551800-00
Entry
Os09t0551800-00   CDS       T02163                                 
Symbol
Os09g0551800
Name
(RAP-DB) Helicase-like, DEXD box c2 type domain containing protein.
  KO
K15362  fanconi anemia group J protein [EC:5.6.2.3]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Os09t0551800-00 (Os09g0551800)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dosa03400]
    Os09t0551800-00 (Os09g0551800)
Enzymes [BR:dosa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     Os09t0551800-00 (Os09g0551800)
DNA repair and recombination proteins [BR:dosa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-B complex
     Os09t0551800-00 (Os09g0551800)
   FA (Fanconi anemia) pathway
    Downstream FA components
     Os09t0551800-00 (Os09g0551800)
SSDB
Motif
Pfam: DEAD_2 Helicase_C_2
Other DBs
RAP-DB: Os09t0551800-00
LinkDB
Position
chr09:complement(join(21867809..21868166,21867639..21867693,21867481..21867556,21867118..21867182,21866993..21867037,21866803..21866903,21866562..21866703,21866397..21866458,21866232..21866311,21866067..21866137,21865602..21865689,21865395..21865467,21865231..21865323,21864786..21864903,21864387..21864480,21864173..21864256,21863933..21864089,21863635..21863822,21863401..21863492,21863061..21863182,21862677..21862801,21862196..21862605,21861292..21862114,21861058..21861111,21860838..21860960,21859819..21859836))
AA seq 1238 aa
MGAATADEDFATPPPPARAPGGRVYQVGGVPVEFPYKPYGTQLAFMGRVIATLDRARRQG
RSHALLESPTGTGKSLSLLCSALAWQRHYPLRAPPAAAPDPFLHGGGFVPDDTQKQATPG
VPEKATRKKNVPTIYYATRTHAQITQVVREYRKTSYRVRMAILASRKHYCVNKNVCMSGN
IDELCKSLLDDSAQGCPEYKNAQKLSRHPSLQIGGCYEVHDIEDLVRVGRKVKGCPYFAA
QTMAEAAQLVFCPYNYLISPIVRRAMDIDIRGSIIVLDEAHNIEDIARDAGSFDVDEESL
LFLRQELEGLVTDEAVAKIYEPLHEVIQGLNGWIDEQGNNLQKNEFEHPASFWTGEEAMK
ELKYAGITPVNFPVLQECATKAIKAASDAESEGVHLSGGSAMTLESLFSSLSYFFAENGR
HSNDYQLALQRFAKREGNSVTSFIGWKCVMSLWCLNPAVVFRDIADLTLSVILTSGTLSP
MGSFASELGVQFEACMEAPHVINADSQVFATVLSSGPTGRRLNASYRTANEYSFQDELGA
TLEEICRVVPGGALVFFPSYNLLEKLQRRWSQTGQWARLEAQKHVCVEPRGSTEELEPVL
KGYYNAILGKAPPKKGRGGAKQIVKNRVTKDSSQESAKGGAAFLAVCRGKVSEGIDFSDD
KARVVVSFVFSSYVFYAPERINDVQVKLKKRYNDSYKSSKDLLSGNEWYCHQAFRALNQA
ADERYQEERNIVYISKWLRNSIRNCGTFQETMDGLTRFFQNAEEQIKIKAQGVSPKDRLD
ACVLPSQGDKRKLPWPEPNFSNQTVLQNNKDVKSESHIDGAGVDRMKLSDTSSESWHLSS
KHSGLVKKQISPEPENVPMACQLPPSYKVQYNLEGEADNGTNYEVNINFIDLEECDTKPR
YVKLTIFNPSEHITQQSTVMEETYAEVPIASPSNRNGENASTVMNEGDPVLDLPISLSAA
NRNISCVSTSAATPERSGSISHLEHESWTNRSVNSHCQKRRKLSSPMSCCTYTERSCSPS
KPYLHGGCDVSMLPGDLRTDGMCCKSMKMSRCENVKVERNSKLAEFPSRESTQEKLFICC
ARCKTALGLQEDGFLVSCSSSLSSKFYLTYLWRHGPSADILPGKDFLASPPLKIKVMVCN
VSSVNKMMLGNLSNEGSAHNSSFWSEKDGCVYKPVILFDDLLHVKHGPSKDQALSAPIGT
VKPISPPPVIDLESFAYKPLKKDPVPVNTRRSKNEWLL
NT seq 3717 nt   +upstreamnt  +downstreamnt
atgggcgccgccacggcggacgaagacttcgccaccccgccgccgccggcgcgggcgccc
ggcggcagggtgtaccaggtgggcggcgtgccggtggagttcccgtacaagccgtacggg
acgcagctcgccttcatgggccgcgtcatcgccacgctggaccgcgcgcggcggcagggc
cgctcccacgcgctcctcgagtcgcccaccggcaccggcaagtcgctctccctcctctgc
tccgcgctcgcctggcagcgccactacccgctgcgtgccccgcccgccgccgcccccgac
ccgttcctccacggcggcggcttcgtccccgacgacacccagaagcaggcgacgcccggc
gtcccggagaaggcgaccaggaagaagaatgttccgaccatctactatgcgacgaggacg
cacgcgcagataacccaggtggtccgggagtaccgcaagacgtcataccgagttcgcatg
gccatcttggcctcaaggaagcactactgtgtcaataagaatgtgtgcatgagtggcaac
atcgatgaactatgcaagtcactccttgatgacagtgctcaaggctgtccagaatacaag
aatgcacagaaactaagtcgccatccatcccttcagattggtggctgctatgaagttcat
gatattgaggatctcgttagagttggacggaaagtgaaggggtgcccatattttgctgca
caaactatggctgaggcagctcaactggttttctgcccatataactatctgattagtcca
atcgtgaggagagcaatggacattgacataagaggctcaatcattgttcttgatgaggct
cacaacatagaagacatagcacgtgatgctggaagttttgatgttgatgaagaatcactt
ctctttttgcggcaagaactagaagggttagtcactgatgaggctgttgcaaagatatac
gaacccttgcatgaagttattcaggggcttaatggttggattgatgagcagggaaataac
cttcaaaagaatgagtttgagcatcctgcttcattttggactggtgaagaggctatgaag
gaactcaagtatgctggcattactcctgtaaacttcccagtattgcaagagtgtgcaaca
aaggctattaaagctgcttcagatgctgaatcagaaggagtgcacttaagtggtggttca
gctatgacactagagagtttgttctcctcattgagctacttttttgctgagaatggacgc
cattcaaatgattaccaacttgctttacagcgttttgctaaacgtgaaggcaattctgtc
acttctttcattggatggaagtgtgtgatgagtctgtggtgtctcaatcctgctgttgtt
tttcgagacatcgcagatctaacactttcagtaattctcacatctggcacactctctcca
atgggatcctttgcatctgaacttggtgtccagtttgaagcttgcatggaagctcctcat
gtaatcaatgctgattctcaggtttttgcaactgtgctatcatctggcccaacaggacgt
cgactgaatgccagttatagaactgcaaatgaatattctttccaggatgaacttggagct
acactagaagaaatatgcagagtagtgcctggtggtgctcttgtgttttttcctagctac
aatttgttggagaaacttcaaaggcgctggtctcagacaggtcaatgggcacgattggag
gctcaaaagcatgtatgcgttgagcctagaggaagtaccgaggaacttgagcctgtccta
aaaggatattacaacgcaatccttggcaaggctcccccaaagaaaggcagaggtggtgca
aaacaaattgtgaaaaatcgagtgacaaaggattcatcacaggagtctgctaaaggaggt
gctgcttttcttgcagtttgtcgtggaaaggtatctgaggggattgacttctctgatgac
aaagctagagttgtggtatcctttgttttctcctcatatgttttttatgcaccagagaga
ataaatgacgttcaagtaaagctcaaaaagagatataatgattcatacaaatcatcaaaa
gatttgttgagtgggaatgaatggtactgccatcaagcatttcgtgctctgaatcaagct
gcagatgagcgttatcaggaagaaagaaatattgtgtatatttctaaatggcttaggaat
tcaattaggaattgtggtactttccaggagacaatggatggattgacaaggttttttcaa
aatgctgaggaacaaataaaaatcaaagctcaaggtgtgtcccctaaggacagattggat
gcttgtgtactcccatctcaaggcgataaaagaaagctgccatggccagaaccaaatttc
tcaaaccagacagtactgcaaaataataaggatgttaagagtgaaagccacattgatggt
gcaggagttgaccgtatgaagttgtctgatacatcatcagagtcatggcatctctcttca
aaacattctggtttagtaaagaaacaaatctccccagaaccagaaaatgtgccaatggca
tgccaactccctccctcatacaaagttcaatataatttagaaggtgaagcagataatggg
acaaattatgaagtaaatataaacttcattgacttggaagagtgtgatactaagccacgg
tatgtgaagttaactatctttaatccttcagaacacataacacaacaatctactgttatg
gaagaaacttatgcagaggtgccaattgctagtcccagtaaccgaaatggggaaaacgcc
tctacagtgatgaatgaaggagatccggttttagatctgcccatttcgctttcagctgct
aacagaaacatttcttgtgtgtccacatcggcagctactcctgaaagatcaggtagcatt
agtcatttggagcatgaatcttggactaacagaagtgtgaattcccactgccagaaaagg
agaaagttaagctcccctatgagctgctgtacctacacagagcgttcatgttctccaagc
aaaccctacttacatggtggttgtgatgtaagcatgttgcctggagatctgagaactgat
ggaatgtgttgcaagagtatgaaaatgtcaagatgtgaaaatgttaaggttgaaagaaac
agcaagcttgcagagttcccatcgagggaatctacgcaggagaagcttttcatttgttgc
gctagatgcaaaacagcacttggattacaagaggatggctttcttgtttcatgctcatcg
tctttgtcctcaaaattttacttgacatatctttggagacatggaccatcagcagatatc
cttccaggaaaagattttttggcatcaccacccttgaagataaaagtgatggtgtgcaat
gtatcttcagtgaacaagatgatgcttggcaacttgagcaatgaaggttctgctcataat
tctagtttttggtctgaaaaggatggatgtgtgtacaagccagtaattttgtttgatgat
cttctgcatgtcaagcatggaccgtcgaaggatcaggctttaagtgctcccataggtact
gttaaacccatctcacccccgccagtgattgatctcgagtcctttgcgtacaaaccactg
aagaaggatcctgtgccggtgaacacaagaaggtccaagaatgagtggctactatga

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