Dendroctonus ponderosae (mountain pine beetle): 109540489
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Entry
109540489 CDS
T04899
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03020
RNA polymerase
dpa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109540489
09124 Replication and repair
03420 Nucleotide excision repair
109540489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpa03021
]
109540489
03400 DNA repair and recombination proteins [BR:
dpa03400
]
109540489
Enzymes [BR:
dpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109540489
Transcription machinery [BR:
dpa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109540489
DNA repair and recombination proteins [BR:
dpa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109540489
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
109540489
NCBI-ProteinID:
XP_019764459
EnsemblRapid:
LOC109540489
LinkDB
All DBs
Position
Unknown
AA seq
1900 aa
AA seq
DB search
MAFTGDSKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRYPETMEAGRPKLGGLMDPRQGV
IDRQSRCQTCAGNMTDCPGHFGHIELAKPVFHIGYITKIIKILRCVCFYCSKLLVSPTNP
KIREIVMKSKGQPRRRLACVYDLCKGKNICEGGDEMDIKKDGDQPDPNKKQSHGGCGRYQ
PNIRRSGLDLTAEWKHVNEDSQEKKIPLTAERVWEIFKHITDEECFVLGMDPKYARPDWM
IATVLPVPPLPVRPAVVMNGSARNQDDLTHKLADIIKINAELEKNETSGAATHILVENVK
MLQFHVATLVDNDMPGLPRAMQKSGKPLKSIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFEKMLELVQRGHSQYPGAKYIIRDNGERID
LRYHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMAHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVAQSMETRAELENLHITPRQIITPQCNKPVMGIVQDTLCAVRKM
TKRDVFIEKEQMMNLLMFLPIWDGRVPRPAILKPKPLWTGKQLFSLIIPGNVNMIRTHST
HPDDEDDGPFKWISPGDTKVMVENGELIMGILCKKSLGASAGSLLHICFLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPMTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRSLPHFIKDDYGPESKGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEMVEFQSLPT
IKLSTESFEKRYKFDPSNERYLRKVFNEDTLKDIMSSGEVIAELEKEWEQLQKDREALRQ
IFPSGDSSVVLPCNLQRMIWNVQKIFHINKKSTTDLSPLQVIQGVRKLLKRCIIVVGEDR
ISIQANENATLLFQCLVRSTLCSKLVSEQYRLTTEAFEWLLGEIETRFQQAQANPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVSKRPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQDFVNVYYEMPDFDPTRIS
PWLLRIELDRKRMVDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNGDDGK
FGEGDEDVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKKRIVITDTGEF
KAIAEWLLETDGTSMMRVLSERDVDAVRTASNDICEIFSVLGIEAVRKSVEKEMNAVLQF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLIDAAAHAEV
DPMRGVSENIIMGQLPRMGTGCFDLLLDADKCKMGMPIPQAQGSEATAGMFFGAAATPSM
SPGGAMTPWNQGATPFIGNASAWSPHNLMGSGMTPGGPAFSPSAASDASGMSPGYGSWSP
TPHSPAMSTFGQSPGYCPSSPAFNPSSPSMTPTSPVYSPTSPGFAGYAPTSPGGYGPSSP
GYSPTSPHYSPTSPAYSPASPRYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPTYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPASPG
GYSPASSYSPTSPNYSPTSPSYSPTSPSYVPSSPRYTPTSPSTFSPTSPRYSPSSPQYSP
TSPSYSPASPTYSPASPNYSPTSPSYSPSSPQYSPASPSYSPTSPSYSPSSPQHTPGSSK
YSPSSLNYSPTSPQYSPQSTKYSPTSPTYTPTSPRGGSPS
NT seq
5703 nt
NT seq
+upstream
nt +downstream
nt
atggctttcacgggagactcaaaagctcccttgaggactgtaaaaagggtgcagttcggt
atcctgagcccagatgaaatcagaagaatgtctgtaacggaaggggggatccgctatcca
gaaactatggaggcaggacgtcccaaattagggggcttgatggatcctcggcaaggtgtt
atagatcgccaatccagatgtcaaacttgtgcaggcaacatgactgactgtccaggacat
tttggtcatatagaacttgcaaagccggtttttcatattggctacatcacaaaaatcatc
aagatactacgatgtgtgtgtttctactgcagtaaattgctcgtgagcccgacaaatcct
aaaattcgtgaaattgtcatgaaatccaaagggcaacctagacgacgattagcgtgtgtc
tacgacctgtgcaaaggtaaaaacatttgtgaaggcggagacgaaatggacataaaaaag
gatggcgatcagcctgatcccaacaagaaacaaagccacggtggttgtggacgctaccaa
ccgaacattcgccgaagtggtttggatttaactgccgaatggaagcacgtaaatgaggac
tctcaagaaaagaagatcccattgacagctgagagagtttgggaaattttcaagcacata
actgacgaagaatgtttcgttcttggaatggacccaaaatacgctcgacccgattggatg
attgccacagttttgccggttcctccacttccggtaagaccggcagtcgtaatgaatggt
tcggccagaaatcaagacgatttgacccataagctggccgatattattaaaataaatgca
gaattagagaagaatgagacatctggagccgctactcatattttagtggagaacgttaaa
atgttgcaatttcacgtagcaactttggttgataatgacatgcccggtttacctagggct
atgcaaaaatcaggaaaaccactgaagtcaatcaaagctcgactaaagggtaaagaagga
agaattcgaggaaaccttatgggaaaacgtgtagacttttctgcacgtactgtgatcacg
ccagatccaaatctacgtattgatcaagtaggagtaccaagaagtatcgcacaaaatatg
acatttcctgaaattgttactccatttaactttgagaaaatgttggagctagtacaaagg
ggtcattctcaatatccgggagctaaatacattattcgtgataacggtgaacggatagat
ttaagataccatccaaaatcttctgatctccatctgcaatgtggttataaagtcgaaaga
catattcgcgatggagacttggttattttcaatcgtcagccaactctacataagatgagt
atgatggctcatagggttaaggtactaccctggtctactttccgaatgaatttgtcttgc
acgtcaccttataatgccgatttcgacggcgacgaaatgaatctccatgtagctcaaagt
atggaaacccgagcagaactggaaaatctgcatattactccacgacagatcattactcct
cagtgtaataaacccgtcatgggtatcgtccaagatacgttatgtgcagttagaaaaatg
actaagcgggatgttttcatcgagaaagaacaaatgatgaatctactcatgtttcttccc
atttgggatggaagagtcccacgacctgctatattaaaaccgaaacccttatggacagga
aagcaattgttctccctgattattcccggaaatgttaacatgattcgaacacattccact
catccagatgatgaggatgatggcccattcaaatggatttctccaggagacacaaaagtt
atggttgaaaatggcgaacttataatgggaatcctttgcaagaagtcactaggagcttca
gccggatctctgctacacatttgcttccttgaattgggacacgaagtttgtggaagattc
tatggaaacatccaaaccgtaattaacaactggctgttactggagggtcacagtattggt
atcggtgatacaattgctgatccaatgacatatttggaaattcaaaaggcaattaagaaa
gccaaagaagacgtaatagaggtaattcagaaagctcacaatatggaactggaacccacc
cctggtaatacacttcgtcagaccttcgagaaccaagtaaacagaattctaaatgatgct
cgtgataaaactggtggatctgccaaaaaatcacttacagaatacaacaatctaaaggct
atggtcgtttcgggttccaagggatctaatattaatatatcacaggttattgcttgtgta
ggacagcagaacgtagaaggaaaacgtattccatttggcttcaggaagagaagtctgccg
catttcattaaagacgattatggacctgaatcgaaagggttcgtagagaattcatatctt
gccggattaactccttccgagttctattttcacgccatgggaggtcgtgaaggtttgatt
gatacagctgtaaagaccgccgagacaggttatattcaacgtcgtctgataaaggctatg
gagtctgtaatggtaaactacgatggaacagtacgtaattctgtaggacagttgattcag
ttgcgatacggtgaagatgggctttgtggggaaatggtagaatttcaatctcttcctact
atcaaacttagtacagaatctttcgaaaaacgatacaaatttgatccatcaaatgaaagg
taccttagaaaagtttttaacgaggacacccttaaagatattatgagttccggagaagtt
attgctgaactagaaaaagaatgggaacagcttcaaaaggacagagaagctttacggcaa
atatttcctagtggtgattctagtgttgtattaccgtgcaatttacagcgaatgatttgg
aatgtccagaagattttccatattaataaaaaatctaccactgacttatcgcctcttcag
gtgattcaaggagtaaggaagctgcttaaaagatgcattatagtggtaggagaagacagg
atctccattcaggccaacgagaatgctaccctgctattccagtgcttggttcgatcgacg
ctttgttcgaaattggtatctgaacaatatagacttacaactgaagcctttgagtggtta
cttggagaaattgaaacacgttttcaacaagctcaggcaaatcccggagagatggttggc
gctctagccgctcagtctcttggcgaaccagccactcagatgacactgaacactttccat
tttgctggtgtatcatcaaagaacgtaactctgggtgtaccacgtttgaaagaaattatt
aacgtttccaagcggccaaaagctccttcacttactgtatttttaacgggagcagcggca
agagatgcggaaaaagcaaagaatgttttatgccggcttgaacacacaacactgcgaaaa
gttacagccaataccgcaatttattatgatcctgatcctcaaaacactgtgatttccgaa
gatcaagacttcgttaatgtgtactatgaaatgcccgattttgaccctaccaggatatcg
ccttggttgttgcgtattgaactggatagaaagcgaatggttgataagaaattgaccatg
gaacaaatagcagagaaaattaatgctggttttggtgacgatcttaattgcatatttaat
gatgacaatgcagacaaattggttttacgaattcggattatgaatggagacgatgggaaa
ttcggagaaggagacgaagatgtcgacaaaatggacgacgacatgtttcttcgatgtatt
gaagccaacatgctgagtgacatgactttgcaaggtatcgaggcaatcagcaaagtgtat
atgcatttgccgcaaactgactccaaaaaacgaattgttatcaccgatacgggcgaattc
aaagccatagctgagtggctgttggaaacggatggtacaagcatgatgcgcgtactttcc
gaacgagatgtagacgcagttaggacggcatcaaacgacatttgtgaaatattttcggtt
ctaggtattgaagctgttcgaaaatcagtagaaaaggaaatgaatgcggtgcttcaattt
tatggtctttacgtaaactatcgtcatttggctttgctttgtgatgtaatgacggcgaaa
ggtcacttgatggctatcacacgtcatggtattaacagacaagataccggggcacttatg
agatgttcatttgaagaaactgtggatgttttaattgatgctgcggctcacgccgaagtg
gatcctatgagaggcgtatctgaaaacattattatgggacaattaccacgaatgggaact
ggttgctttgatttactactggatgctgataaatgtaaaatgggcatgcctatccctcaa
gcacaaggaagtgaagctaccgcaggaatgttctttggagcagcagctactccaagtatg
agtcctgggggagctatgacgccctggaatcaaggagcaactcctttcattggaaatgct
agtgcatggtctccgcataatctcatgggcagcggaatgacgcccgggggaccagctttt
tcaccatctgctgcttcagatgcatcaggcatgtctccggggtatgggtcgtggtcacct
actccacactcaccggccatgtcaacgtttgggcaatctccgggttattgcccgtctagt
ccagctttcaatccatcgtcaccgtctatgacgcctacgtcgcctgtttactcccccacg
tcaccaggtttcgctggctatgctcctaccagtcctgggggatatggacctagcagtcct
gggtattcaccaactagtcctcattattccccaacatctccagcttattcgccagccagt
ccacggtattcaccaacgagtcctgggtattcgccaacgagtccaagttattcgcctact
tctccatcttacagtccaacgtctccaagttactcgccaacgtcaccgtcttatagtccg
acttctccgagttactcgccgactagtcctagttattctccgactagtccaacttactct
ccaacgagtccgggttattctcctactagtcccagttattcgcctacttctccatcctac
agtccaacgtcaccaagttattccccaacttctcccgcatacagtccggcttcaccaggc
ggctattctccagcttcttcctatagtccaacgtcaccgaactattccccaacttctcct
agctattcacctacgtccccaagttatgttccgtcttctccaagatatactccaacatct
ccatccacattctcgccaacttctccgagatattcgccttcttctccacaatattcacct
acgtctccttcctattcgccagcaagtcccacgtactcgcctgcgtctccaaattactcg
cccacatctccgagttactcgccgtcgtcacctcaatattctccagcatccccaagttat
tcgccgacaagcccgagctattcacccagcagtcctcagcatacaccgggaagctcaaaa
tattctccttcatctctaaattattctccgacgtctccccaatattctcctcagagtacg
aagtattcgcccacttctccgacttatacacccactagtccgagggggggttcaccatcg
tga
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integrated database retrieval system
