Dendroctonus ponderosae (mountain pine beetle): 109545015
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Entry
109545015 CDS
T04899
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
dpa
Dendroctonus ponderosae (mountain pine beetle)
Pathway
dpa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dpa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109545015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dpa03019
]
109545015
Enzymes [BR:
dpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109545015
Messenger RNA biogenesis [BR:
dpa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109545015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
TniB
AAA_10
MMR_HSR1
ATP_bind_1
CbiA
AAA_22
nSTAND3
AAA_29
RsgA_GTPase
ABC_tran
Pirin_C_2
AAA_35
Motif
Other DBs
NCBI-GeneID:
109545015
NCBI-ProteinID:
XP_019771053
EnsemblRapid:
LOC109545015
UniProt:
N6TR93
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MTDEKKSVLQEYKLEADNELRFEVETKGEKVYLTLKNGLAEIFGTELVKGKTYEFTGGSK
VAVFTWHGCTLQVKGKTDVIYTARETPMVIYSNCHAALEEMRTESEIENKRGPTTMVVGP
TDVGKSTLCKILLNYAVRMGRRPIYVDLDVGQGGISMPGTIGASVIERPASVDDGFSQEA
PLVYHLGHKTPSGNILLYQKITEELAATVKERLEPNKKTRHSGVIINTCGWVKGDGYKQL
LLAGKVFEVDVVLVLDQERLYNELVRDMPNYIKIVFLQKSGGVVELSKSVRSEARDQRIR
EYFYGTPKNQLYPHSYDLKWADVKLFRIGAPKLPASCLPHGMKPEDHRTKLVPLTPHSGI
SHHLAAVSFAEAEDDVICAHVAGFVCVSNVDEERQTITLLSPQPKPLPNAVLVLSDLQFM
DSH
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgagaaaaaatcggtgttacaagagtacaaactagaagccgataatgagttg
cgtttcgaagttgaaaccaaaggggagaaggtgtacttaacattgaaaaatggtttggcg
gagatttttggaactgagctggtcaaaggaaaaacctacgagtttacaggcggctccaaa
gtagctgtgttcacttggcatggttgtacattgcaagttaaagggaaaacagatgtaatt
tatactgcaagggaaactcctatggtaatttattcaaactgccatgcggcactggaagaa
atgcgtactgagagtgagatcgaaaacaaacgaggacccaccaccatggttgtgggccct
actgatgttggcaaatctacattgtgcaaaattttgctcaattatgcggtgaggatgggt
cgcagacccatatatgtcgatttagatgttggccaaggaggcatttcaatgccaggaact
attggtgcatcagtaatagaaagacccgcttctgtagatgacggattttcacaagaagcc
ccccttgtgtatcatttaggccacaagactccgtctggcaatatattactctatcaaaaa
attactgaggaactagctgcgaccgtgaaagaaagactggaaccaaataagaaaacgagg
cattcaggcgtcatcatcaatacctgtggatgggtgaaaggagacggctataagcaattg
ctgctagctggtaaggtatttgaggtggatgttgttttggttttggaccaagagagactg
tacaatgaactggtgcgagacatgcccaactatattaaaatcgtatttctacaaaagagc
ggcggtgtcgtagaactttctaaaagtgtacgaagtgaagcaagagatcaaaggattcga
gaatacttttatggaactccaaaaaatcaattatatcctcattcttatgatttgaaatgg
gcggatgtgaaactcttcagaatcggtgcaccaaagttgccagcctcatgtttacctcat
ggaatgaaaccggaagatcataggacaaaactggtaccgttgactccgcattcaggaatt
tcgcaccatttagcggccgtaagtttcgcagaagctgaggacgacgtcatttgtgcgcac
gtagccggatttgtttgcgtatcaaatgtggacgaagaaagacaaacaatcaccctattg
tcgccgcagccgaagccattacccaatgccgttctagttttatcagacctacaatttatg
gatagtcattag
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