Dictyostelium purpureum (cellular slime mold): DICPUDRAFT_46649
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Entry
DICPUDRAFT_46649 CDS
T02090
Name
(RefSeq) RNA polymerase II core subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
dpp
Dictyostelium purpureum (cellular slime mold)
Pathway
dpp03020
RNA polymerase
dpp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DICPUDRAFT_46649
09124 Replication and repair
03420 Nucleotide excision repair
DICPUDRAFT_46649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpp03021
]
DICPUDRAFT_46649
03400 DNA repair and recombination proteins [BR:
dpp03400
]
DICPUDRAFT_46649
Enzymes [BR:
dpp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DICPUDRAFT_46649
Transcription machinery [BR:
dpp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
DICPUDRAFT_46649
DNA repair and recombination proteins [BR:
dpp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
DICPUDRAFT_46649
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
10500160
NCBI-ProteinID:
XP_003286212
JGI:
Dicpu1_46649
UniProt:
F0ZFN5
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MSDYMLNDDSQDNYNGDITQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESP
PITLRPEAQHHPGQTQIQNTVSTFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYS
APLFVDITKTVMTGPKGKIEEQRRNDELLKRVFIGKVPIMLRSQYCMLYEATDRDLTTMG
ECPFDQGGYFVINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTST
MYLKMLHNTNKGPVGIKATIPYIKQDVPVIIVFRALGFVADKDILEHICYDFNDAQMMDL
MRPSLEESFVIQSQEVALDYLGKRGSTIGTREQRIKFAREVLQKEMLPHVSVAEFYETKK
AFYFGYIVHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQR
CIDKDKEFIPSSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHL
RRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLSMMSYISVGSASQPIL
EFLEEWTTENLEEISDLSSIFTATKIFVNGMWVGIHHQPDKLLGTLRLLRRCGDVSVEVS
VVRDIREKELRLYTDPGRCCRPLFVVQDNKLQVKKHHISKLINNSDEYKWQDLLNEGIIE
YIDAEEEETVLIAMTPDDLVPLANEQIVHTYTHCEIHPSMILGVCCSIIPFPDHNQSPRN
TYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNACVAI
ACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEQFEKPDRDTCAGMRH
GSYEKIDEDGLVAPGVRVAGDDIIIGKTTPLPPQEDDLGPKTRRHTKRDSSTALRSSENG
IVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPWTVEGIV
PDIVVNPHAIPSRMTIGQLIECLLGKVSASTGDEGDATPFTDVTVEAISQALHKVGYQMT
GHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGG
LRFGEMERDCMISHGSAAFLRERLFDQSDHYRVHVCDICGLIAIANLKKNSFECRRCKNK
TQISQVRMPYAAKLLFQELMSMSIAPRMF
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattatatgttaaatgatgattctcaagataattacaatggcgatataacacaa
gaagatgtttggacagttatcagtgcatattttcaagaaaaaggtttagttagacaacaa
ttagattcatttgatgaatttattcaaaatacaatgcaagaaattattgatgaatcacca
ccaattacattaagacctgaagctcaacatcatccaggtcaaacacaaattcaaaataca
gtatcaaccttttcagttaaatttggacaaatttatttaagtaaaccaacagcagaaatc
gatggtgtatcacaacaagtcacaccaaaccaagcaagaatcagaaatttaacctattca
gccccattatttgttgatatcactaaaactgttatgactggcccaaaaggaaaaatcgaa
gaacaacgtcgtaatgatgaattattaaaaagagtttttattggtaaagtcccaattatg
ttacgttcacagtattgtatgttatatgaagcaactgatagagatctcacaactatgggt
gaatgtccatttgatcaaggtggttatttcgttattaatggttctgaaaaagtattaatt
gctcaagaaaaaatgaacaacaatcatgtttatgtctttaaaaaatcaccaccatcaaaa
tattcctatgttgcagaaattcgttcatgtcaagaaactggttctcgtccaacctcaaca
atgtatttgaaaatgttacacaatacaaacaaaggtccagtcggtatcaaagctaccatc
ccatatatcaaacaagatgttccagttattattgtttttagagctttaggttttgttgcc
gataaagatattttagaacatatttgctacgatttcaacgatgcccaaatgatggatctc
atgagaccatctttagaagaatcatttgtcattcaaagtcaagaagttgctttggattat
ttaggtaaacgtggtagtactattggtacaagggaacaacgtattaaatttgcccgtgaa
gttttacaaaaagaaatgttgccacatgtcagtgttgctgaattttatgaaaccaaaaaa
gctttctattttggttatattgtacatagattacttttagcttcattagaacgtcgtcca
ttagatgatcgtgatcattttgccaacaaacgtttagatttagcaggtccacttttaggt
acacttttcagacaattatttaaaaaacttactaaagacgttcgtctttatcttcaacgt
tgtatagataaagataaagaattcattccatcatcggctgtcaaatctaaaactattact
agtggtcttaaatattctttagctactggtaattggggttcatcaaagagtggtggtaca
aagagtggtgtagctcaagtattaaatcgtcttacttttgcctcaacattatcccattta
cgtcgtctcaatacaccaattggtagagaaggtaaattggctaaaccacgtcaacttcat
aacactcattggggtattgtttgtccatcagaaaccccagaaggtcaagcttgtggtctt
gttaagaatctttcaatgatgtcttatatttctgtaggttctgcttctcaaccaatttta
gagtttcttgaagaatggaccaccgaaaatctcgaagaaattagtgatctctcatccatt
ttcactgcaactaaaattttcgtcaatggtatgtgggttggtattcatcatcaaccagat
aagcttttaggtacccttcgtcttcttagacgttgtggtgatgtatctgtcgaagtttca
gtagttagagacattagagaaaaagaattaagactttacactgatccaggccgttgttgt
agacctctctttgtagtccaagataataaacttcaagttaaaaaacatcacatctccaaa
cttatcaataatagtgatgaatataaatggcaagatcttttaaatgaaggtatcattgaa
tatatcgatgcagaagaagaagaaactgttttaattgcaatgacaccagacgatttagtt
ccattagcaaatgaacaaatcgttcacacctatactcattgtgaaattcatccatcaatg
attcttggtgtttgttgttcaattattccattcccagatcataatcaatcacctcgtaat
acctatcaagctgctatgggtaagcaagctatgggtgtttacattacaaattatcaacta
cgtatggatactatggctcatgtactcttttatccacaaaaacctttagttacaactcgt
tcaatggaatatttacattttagagaattaccagccggtcaaaatgcttgtgtagctatt
gcttgttactctggttacaatcaagaagattctgtaattcttaatcaatctgctatcgat
cgtggtttattccgttcaatgttttatcgtgcatataaagatgaacaaaagaaacaaaca
tcactcatggaagagcaatttgaaaaaccagatcgtgatacttgtgctggtatgcgtcat
ggttcctatgaaaaaattgatgaagatggtttggttgccccaggtgtccgtgttgctggt
gatgatattatcattggtaaaacaactccattaccaccacaagaggatgatttaggtcca
aaaacccgtcgtcacactaaacgtgatagtagtactgcacttcgttcatctgaaaatggt
attgttgatcaagtcattcttaccaccagcggtgaaggttttaaattctgtaaagttaga
gttcgttcaatgagagtaccacaaattggtgataaattctcttcacgtcatggtcaaaaa
ggtacttgtggtatggcttatcgtcaagaagatttaccatggactgtagaaggtattgtt
ccagatattgttgtaaatccacacgctattccatctcgtatgactattggtcaattaatt
gaatgtcttttaggtaaagtttctgcctcaactggtgatgaaggtgatgccactccattc
actgatgttactgtagaagctatttcacaagctcttcacaaagttggttatcaaatgact
ggtcacgaagttatgtataatggtcacactggtcgtcgtatggatgctcaaattttcatt
ggtccaacctattaccaacgtcttaaacatatggtagatgataaaattcacagtcgttca
agaggtccagttcaaattcttactcgtcaaccagtagaaggtcgttcaagagatggtggt
cttcgtttcggtgagatggaaagagattgtatgatttcccatggttcagcagctttcctt
agagaaagattattcgatcaatcagatcattatcgtgtacatgtatgcgatatttgtggt
cttatcgccattgcaaatttaaagaagaattcattcgaatgtcgtagatgtaagaacaaa
actcaaatttcacaagtcagaatgccatatgccgcaaaattgcttttccaagagcttatg
agtatgagtattgctccgcgtatgttctaa
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