Dryobates pubescens (Downy woodpecker): 104302489 Help Entry 104302489         CDS       T08526                                  Symbol BRIP1 Name (RefSeq) Fanconi anemia group J protein   KO K15362   fanconi anemia group J protein [EC:5.6.2.3] Organism dpub  Dryobates pubescens (Downy woodpecker) Pathway dpub03440   Homologous recombination dpub03460   Fanconi anemia pathway Brite KEGG Orthology (KO) [BR:dpub00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     104302489 (BRIP1)    03460 Fanconi anemia pathway     104302489 (BRIP1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:dpub03400]     104302489 (BRIP1) Enzymes [BR:dpub01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      104302489 (BRIP1) DNA repair and recombination proteins [BR:dpub03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     BRCA1-B complex      104302489 (BRIP1)    FA (Fanconi anemia) pathway     Downstream FA components      104302489 (BRIP1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DEAD_2 Helicase_C_2 DEAD ResIII Motif Other DBs NCBI-GeneID:  104302489 NCBI-ProteinID:  XP_009901307 LinkDB All DBs Position Unknown AA seq 1237 aa AA seqDB search MSSEVSEYTIGGVKIIFPCKAYPSQLAMMNAIVKGLNNKQHCLLESPTGSGKSLALLCSA LSWQQSLYEKPLLTSSCEKENRKAESSPPCCCTCHSQPKGNEAAPCLNPAASCSFNNHEP GSSTKPGSPLTNTECKEKETLASKLSAKKRSSLCDEESDDFQVDRKRIRPLETEQQVRKR HCLAKGVQLVDALEVYNQRRNGELVVHPEKSLKTTPFSPKASSGPCTECSCSSGKETDKD TGSKKKKENGEKLFVPKIFFGTRTHKQISQITRELKRTAYSTVSMTILSSRDYTCIHPTV SSSGSNRNEMCVELLEGKHGKSCLYYHGAHKLGEHHALQSAHRVYQAWDIEDLVSLGKKL RACPYFAARELMVGADIVFCPYNYLLDPQIRESMDINLKDQVVILDEAHNIEDCARESVS YSVTESQLRAAREELDFMVNNNIRQKDHEPLRAVCCSLTNWLQDSSSQLVERGYETACKV WSGKEMLNHLHEMGITGITFPILQKHLTTVLQKEEKVSAFGREELIEIPVVSPATQIVLK GLFMVLLCLFKDKSRYADDYRVALQQTYAWMNENQSDVSDASAFFTRPKRKRGLRQKTVV HMLNFWCLNPAVAFSNLSDVRTIVLTSGTLSPMDSFASELGVKFSIQLEANHVIRNSQVW VGTIGAGPNGRKLCATFQHTETFEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDKLRDR WMSTGLWRNLELVKTVIAEPQGGAKSDFDELLRIYYDAIKHKGERDGALLIAVCRGKVSE GLDFCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKIARGLLPGSQWYEIQAYRALNQ ALGRCIRHRNDWGALILVDDRFRNNPNKYIAGLSKWIRQQIQHHQNFGSALESLHAFALR NQKGIECSPECSSEFPHTPSKDLSQASQQDATIHLSPDVPAKTPQKAEAGSHSHHVTQRR KHMGSTPKMPAAETEREDQNGWANVGVLEEHCSSKPLTSTPLPAAKICRSTATSKQKNVN RTNEVIDGVTRCQSSLITEHEPSVPESCVEATSISLKTSEAPAAEEPPDEVQLQAESCSE FPSVARKSELSNLNVCAEAEEEDESIYFTPELYDDVESEEEETKPLVPICNTNENQTECG NSTVTADLPAVNTSETPNVTKKMMGDGRSTGSHGIMQKEGSRNSAVNSAELTSEVEAEQI APHEKDTKKRTISLSRSRNKGVSSFLLSKSSTQGQLL NT seq 3714 nt NT seq  +upstreamnt  +downstreamnt atgtcttctgaggtgtcagagtataccattgggggagtgaagatcattttcccttgcaag gcttacccttcacagctggctatgatgaatgctattgtaaagggcttaaataacaaacag cactgtttgttggagagccctactggaagtggcaaaagtttggcattgctttgttctgca ttatcatggcagcagtctctgtatgagaagccactgcttacatcatcatgtgaaaaggaa aacagaaaggcagagagctcaccgccatgttgctgcacatgccattcccaacccaagggc aacgaggctgcaccatgcctgaaccctgctgcttcttgctcttttaacaatcatgaacca ggaagttccacaaaacctggaagcccactaacaaacacagaatgtaaggaaaaagaaaca ctagcttcaaagctatctgccaagaagaggtcgtctctgtgtgatgaagagagtgatgat tttcaagtagacaggaaaaggattcgtcctctagaaactgagcagcaggttagaaaacgt cattgcttagcaaaaggagtgcagctagttgatgctttagaagtttacaaccagagaaga aatggagagctggttgttcaccctgaaaaaagcttgaaaaccactcctttttctcccaaa gcatcttctggcccttgcactgagtgttcctgctcttctggaaaagaaactgataaagat actggtagcaaaaagaagaaagaaaatggagagaagttgtttgtgcccaaaatatttttt ggcacacgaactcacaagcaaatatcccaaattaccagagagctgaagagaacagcgtat tccactgtctccatgacaattctttccagcagggattatacctgtattcatccaacagtg tctagcagtggcagtaacaggaatgaaatgtgtgttgaattgctggaaggcaaacatggc aagtcctgtctttactatcatggtgctcataaacttggtgaacaccatgctctacagtct gcacatcgggtgtatcaagcttgggacattgaagatctagtgagcctgggaaagaagctt cgtgcctgtccatattttgcagccagagaactcatggtgggcgcagatattgtgttttgt ccttataactatctcctcgacccacagatacgggagagcatggatattaacctaaaagac caagtagtcattttggatgaagctcataacatcgaggattgtgctcgggagtcggtgagc tacagtgttacagaaagtcagttaagagctgctcgagaagagctagatttcatggtcaat aacaacatcagacagaaggatcatgagcccttacgggctgtgtgctgctctttgacaaac tggttacaggatagctccagtcagctggtagaaagagggtatgaaactgcctgtaaagtt tggagtggaaaagaaatgctcaaccatttgcatgagatgggaataactggcattactttt cccattttacagaaacatcttactactgtcctgcagaaagaagaaaaagtctcagctttt ggtagagaggaacttattgagatcccagttgtgagccctgccactcagattgtgctgaag gggctattcatggttcttctctgtctttttaaagataaaagcaggtatgccgatgactac agagttgctctacaacaaacttatgcttggatgaacgaaaaccaatctgatgtttcagat gcaagtgccttctttacacggcccaagcgcaagaggggtttgcggcagaagaccgtcgtc cacatgcttaatttttggtgcttgaaccctgctgtggctttttcaaacttaagtgatgtt agaacaattgttctgacctctggcacgctctctccaatggattcgtttgcttcagagctt ggtgtgaagttttctattcagctggaggcaaatcatgttattcggaactcacaggtttgg gttggcaccattggagcaggccctaacggacggaagttgtgtgccaccttccagcacaca gagacctttgagttccaagatgaggtgggagcgcttctgctttcggtctgtcaaaaagtt ggccaaggaattttgtgctttttgccatcctataagctgctggacaaattaagagatcgc tggatgagcactggcttatggagaaacctggagctggtgaagacagtcattgcagagcct caaggaggggcaaagagtgactttgatgaactgctgagaatctactacgatgcaataaaa cataaaggagaaagagatggagcactccttatagctgtatgcagagggaaagtcagtgaa ggcttggatttctgtgatgagaatgcccgggcagttataaccatagggattccattccca aatgtgaaagacctccaggttgaattaaagaggaagtacaatgaccagcacaaaattgcc agaggccttttaccagggagtcagtggtatgaaattcaagcttacagggctctgaaccaa gccctaggcaggtgtataaggcacaggaatgactggggtgctcttattttagtggatgac cgcttccggaataaccccaataagtacatagctggattatccaaatggattcgtcagcag atccagcaccatcagaattttggtagtgcgcttgaatccctgcatgcatttgctctaaga aaccagaaaggcattgagtgttcaccagagtgcagcagcgaatttccccatacaccttca aaagacctgtcacaagcctctcaacaggatgcaaccattcatctgtcaccagatgttcct gctaaaactcctcagaaagctgaagcagggagtcattcccaccatgtaacacaaaggagg aaacatatgggctccacacccaaaatgccagcagctgaaacagagagagaagaccaaaat ggttgggctaatgttggtgttctggaagaacattgcagctctaaaccactgacttcaaca cctttgcctgcagccaagatctgcaggtccacagctactagtaaacaaaagaatgtgaac aggaccaatgaagttattgacggtgtaactcgatgccagtcatcattaattacagaacat gaaccaagtgtaccggaatcatgtgtggaagcaaccagtatttcacttaaaactagtgag gctccagctgctgaagagcctcctgatgaagtacagcttcaagccgagtcctgcagtgag ttcccttcagtggcgaggaaatctgaactttcaaatttaaatgtatgtgcagaagctgaa gaagaggatgaaagtatctacttcacacctgaactctatgatgacgtagaatcagaggaa gaggaaaccaaaccactggtcccaatctgtaacacaaatgagaatcagactgaatgtggg aactccacagtcactgctgaccttcctgcagtgaacacctcagaaacaccaaatgtgact aaaaaaatgatgggtgatggcagaagcacaggttcacatggaattatgcaaaaggaaggg agtaggaatagtgcagttaatagtgcagagctgactagtgaagtagaagcagagcagata gcacctcatgagaaggacaccaaaaaacggacaatcagcctgtccaggtcacgaaacaaa ggtgtgtcatctttcttactgagtaagtctagcacacagggacagctcctctag

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