KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_231046
Entry
DAPPUDRAFT_231046 CDS       T04347                                 
Name
(GenBank) hypothetical protein
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
dpx  Daphnia pulex (common water flea)
Pathway
dpx03020  RNA polymerase
dpx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DAPPUDRAFT_231046
  09124 Replication and repair
   03420 Nucleotide excision repair
    DAPPUDRAFT_231046
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dpx03021]
    DAPPUDRAFT_231046
   03400 DNA repair and recombination proteins [BR:dpx03400]
    DAPPUDRAFT_231046
Transcription machinery [BR:dpx03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     DAPPUDRAFT_231046
DNA repair and recombination proteins [BR:dpx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      DAPPUDRAFT_231046
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD Zn_ribbon_recom zf-C4_Topoisom Lar_restr_allev DZR
Other DBs
NCBI-ProteinID: EFX79326
JGI: Dappu1_231046
UniProt: E9GM94
LinkDB
Position
Unknown
AA seq 127 aa
MFTQNKRDDGPGFVGIRFCPSCNNMLYPKEDKENRALLYACRNCDFKTLADNHCVYVNKI
MHEIDELTQIVADVISDPTLPRTEDHPCPKCTHREAVFFQSQSRRAEEEMRLYYVCTNSN
CTHRWTE
NT seq 384 nt   +upstreamnt  +downstreamnt
atgttcacacaaaataaaagggatgacggaccaggatttgtaggaattcgtttctgtcct
agttgtaacaacatgttgtatcccaaggaagacaaggaaaatcgagctctactttacgca
tgtcggaattgtgattttaaaactttggctgacaatcactgtgtctatgtcaacaagatc
atgcacgaaattgatgaactgactcagatagtggctgatgtcatatcagaccctacattg
ccaagaactgaggatcacccatgtcccaaatgcactcacagagaggcagtatttttccaa
tctcaatcacgacgagcagaagaggaaatgagactttactatgtctgcaccaattcaaat
tgcacacacagatggactgagtaa

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