Daphnia pulex (common water flea): DAPPUDRAFT_52186
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Entry
DAPPUDRAFT_52186 CDS
T04347
Name
(GenBank) hypothetical protein
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dpx
Daphnia pulex (common water flea)
Pathway
dpx03020
RNA polymerase
dpx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DAPPUDRAFT_52186
09124 Replication and repair
03420 Nucleotide excision repair
DAPPUDRAFT_52186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpx03021
]
DAPPUDRAFT_52186
03400 DNA repair and recombination proteins [BR:
dpx03400
]
DAPPUDRAFT_52186
Enzymes [BR:
dpx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DAPPUDRAFT_52186
Transcription machinery [BR:
dpx03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
DAPPUDRAFT_52186
DNA repair and recombination proteins [BR:
dpx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
DAPPUDRAFT_52186
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_6
RNA_pol_Rpb1_5
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
DUF3137
Motif
Other DBs
NCBI-ProteinID:
EFX79682
JGI:
Dappu1_52186
UniProt:
E9GLJ4
LinkDB
All DBs
Position
Unknown
AA seq
1047 aa
AA seq
DB search
MYFVGSETKPTIRVVKKVQLGILSPDEIRKQSVTAGGIKYPEIYEGGKPKLGGIMDPRQG
VTNRSARCQTCDGNMNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYYCSKLLVSPNN
PKLQEIFLKSEDQPGKRMALVHELCKGKNICEGGDQIGEDEPITEDMVGHGGCGRSQPSI
SNRQLEIIAKWKNLDIVSGAKKLVLTAEHVLAIFKRISDEECAILGMDPKYARPEWMIIS
CLPVPPPNTRPPVMNGSEHDYLTRKLVDIVKVNNELQRNEQSGAEDPIIANNIKMLQFNI
AMLSNSIKNRLEGKKGRIRGNLMGKLVDFSARTVITPDPNLRIDQVGVPRIIAQNMTFPE
IVTSFNIEKMQELVQRAKSQITFILMIIGKQLFTLIIPGNVNMMRTHSTHPDDEDEGPYK
WISSGDTKVMVENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGQFYGNLQTVINNW
LLYEGHSIGIGDMLAERLTYLNIQATIQNAKEDVIEVTQNSHNDELEPTPGNTLRQTFEN
QVLRIIYDAQEQASDLAKNSLKGYNNLKAMAVAGSSGSSITTSQAIACVGQQNVEGQRIP
FGFRKRTLPHFIKDDNGPESRGFVENSYLTGLTPSEFYFHAMAGRELLIYDARIKSETGI
IRQLVKSMESVMVHYDGTVRNSAGRLLQFSYGEDGLAAESVELQKMPTVKLSNSVFEKKF
KFDPSNENYVRRIFNEEITRELISSAEVITEIEHEWEQLYKDREALRQIFPTGENKVVLP
CNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRDLLAKCVIVVGEDKLSIQANQNATLL
FQCLVRSTLCSKRIAEEYRLSSEAFEWLIGKIETRFQQAQAQPGEMVGALAAQSLGQPAT
QMTLNTFHFAGVSSKNVTLGVARLKEIINISKSPKSPSMTVFLRGEAATDAEKAREVLCR
LEHTTLRKVTANTAIYYDPDPLNTVILEDQDFVNFYYEMGDFDPTRISPWLLRIELDRKR
MTDKRLTMEQIAEKVYTMFGNAVKCMF
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgtattttgttggctcggaaaccaaaccaaccatccgggttgtgaaaaaagttcaactt
ggtatcttgagtccagatgaaataagaaagcaatctgtcacagcaggtggcataaaatat
cctgagatttatgaaggtggcaagcctaaattgggtgggatcatggatcccagacaggga
gtcacaaatcgatcagcaaggtgccagacttgtgacggaaacatgaatgaatgcccagga
cattttggtcacatcgatctggccaaaccagtcttccatgttggattctttgagaaaaca
atagaaatccttcgctgtgtgtgttattattgctcaaaacttctggtgagcccaaacaat
cctaaacttcaggagatttttctgaaatccgaagaccaacctggaaaacgtatggccctt
gttcatgaactctgcaaaggcaaaaacatttgtgaaggtggtgaccaaattggcgaagat
gaacccataacagaagatatggttggccatggtgggtgtggtagatctcaaccttcaata
tccaatcgtcaactcgagatcattgccaaatggaaaaacctcgatatagtgtctggtgcc
aagaaactagttctgacagccgaacacgttcttgccattttcaaacgtatttctgacgaa
gaatgtgcaatcctcggtatggatcctaaatatgctcgtccagaatggatgatcatcagt
tgcttgcctgtgcctcctcctaacactcgacctcctgttatgaatgggtcagaacatgac
tatctcacacgaaaacttgtcgatatcgttaaagttaacaatgaactgcaacgcaacgaa
cagtctggcgctgaagatcccatcatcgctaataatattaaaatgcttcagtttaacatt
gccatgttaagtaactcaataaaaaaccgcctagaaggcaagaaaggacgcattcgaggt
aacttgatgggaaagcttgttgacttttcggctcgtaccgtaattacgcctgacccaaat
ctgcgtatcgaccaagttggcgtaccgcgaatcatagctcaaaacatgaccttccctgaa
atcgtcacttcattcaacattgaaaagatgcaagaattggtccagcgagctaaatcgcaa
ataacatttattttaatgattataggcaagcagctgttcactctcatcattcctggaaac
gtcaacatgatgcgaacgcattctacccatcctgatgatgaagacgaagggccctacaag
tggatctcttctggtgacaccaaagtcatggttgaaaacggcgagttggtcatgggcatc
ctatgtaaaaagacgctcggtgcctctgctgcctctctgctgcacattattttcatggaa
ttgggtcacgaagtatgcggtcaattctacggcaaccttcaaacggtcatcaacaactgg
ttactgtacgagggtcacagcattggaatcggagacatgttagctgaacgtctaacgtac
ctgaacattcaggccaccattcaaaatgctaaagaagacgtgatagaggtcactcaaaat
tctcacaatgatgagcttgaacccacacctggtaacactctacgacagactttcgaaaat
caagtgcttcgtatcatctacgacgcccaagaacaagctagtgatttagctaagaattct
ttaaaaggatacaataacctcaaggccatggcggtagctggttccagcggttccagtatt
accacctctcaggccattgcctgcgtcggtcagcagaacgtcgagggtcaacgaattccc
tttggattccgcaagagaactttgccccacttcatcaaagacgataacggtcccgagtct
agaggtttcgtcgaaaattcataccttaccggcttgacaccttccgagttttacttccac
gctatggctggtcgtgaacttcttatttacgatgcaaggatcaaatccgaaacgggtatc
attcgacaacttgtgaagagcatggagtctgtgatggtccactacgacggcacggtacgg
aattcggcaggccggcttcttcagttttcctatggagaagacggacttgctgctgaatcc
gtcgaacttcagaagatgccgaccgtcaagctctctaattcagtatttgaaaagaaattc
aagtttgaccccagcaacgagaactatgttcgacgaatctttaatgaagaaatcacccgt
gaattgatcagtagcgcggaagtcatcaccgaaatcgaacacgaatgggagcagttatac
aaagatcgcgaagctctacgtcaaattttccctactggcgagaacaaagtggtgttgcct
tgtaacctgcagcgcatgatttggaacgtccagaagattttccacatcaacaaacgagca
ccgacagatttgagtccacttcgtgttatccaaggcgttagagacctgctagccaaatgc
gtcatcgtcgttggcgaagataaattaagcatccaagccaatcagaacgccacgctcttg
ttccagtgcctggttcgctctacattgtgttccaaacgaatagcggaagaatatcgcctt
tcatcggaagcctttgaatggctcatcggcaagatcgaaacccgtttccagcaagcacaa
gctcaacctggtgaaatggtgggagcactcgcagcccagtctctcggtcaacctgccacg
caaatgacgctcaacactttccattttgctggtgtgtcatccaagaacgtaacactcggt
gtcgcccgtcttaaggaaattatcaacatcagtaagagtccgaaatccccgtctatgacg
gttttcttgagaggagaagcagcgaccgatgctgagaaagctagagaggttttgtgtcgg
cttgagcacacgacgttgcgaaaggtcacggccaacacagccatctactacgatccagat
ccgctgaacacggtcatcctggaagatcaagatttcgtcaatttctactacgaaatgggt
gatttcgatcctactcgaatctctccctggttgttgcgtatcgaacttgatcgaaaacgt
atgacggacaagcggttgaccatggagcagattgctgaaaaagtgtatacgatgtttggt
aatgctgtaaaatgcatgttc
DBGET
integrated database retrieval system