Daphnia pulex (common water flea): DAPPUDRAFT_67765 Help Entry DAPPUDRAFT_67765  CDS       T04347                                  Name (GenBank) hypothetical protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism dpx  Daphnia pulex (common water flea) Pathway dpx03020   RNA polymerase dpx03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:dpx00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     DAPPUDRAFT_67765   09124 Replication and repair    03420 Nucleotide excision repair     DAPPUDRAFT_67765  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:dpx03021]     DAPPUDRAFT_67765    03400 DNA repair and recombination proteins [BR:dpx03400]     DAPPUDRAFT_67765 Enzymes [BR:dpx01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      DAPPUDRAFT_67765 Transcription machinery [BR:dpx03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      DAPPUDRAFT_67765 DNA repair and recombination proteins [BR:dpx03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       DAPPUDRAFT_67765 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_6 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5 DUF3137 Motif Other DBs NCBI-ProteinID:  EFX62718 JGI:  Dappu1_67765 UniProt:  E9HZW0 LinkDB All DBs Position Unknown AA seq 1138 aa AA seqDB search MDTLGSDSKATIRLVKKVQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQG VVIRKAKCQTCDGTINECPGHFGHINLAKPVYHVGFFEKTIEILRCVCYYCSKLLVNPNN PKFKEILVKSKDQPLKCMAHVYDLCKGINICEVGNGGCGRYLPKIRRLKGFKINGEWKHV DEDSQEKKIVLTAERVWEIFKRISDEDCAILGMDPKYARPDWMIVTCLPVPPPAVRPAQI IGMDQIENDLTMKLADIVRANNKLLGAVQSGEILSGKTKMLQLHIASMMDSKSTLLPAYY HESTLPTQSIKDRLEGRDGRIRGNLMGKRVDFAARTVITPDPNLRIDQVGIPRSIAQNMT FPERVAPFNIEKMQELVQRGNSQYPGAKFCIIKKNGDRIDLRFPSKSPDLRLECGDIVER HICDGDLVVLNRQPSLRKEGVMGHRVKVLPCSTFCLNPSVATAYNANFDGDEMNLHVPQS METRSEVESLLVSSRLIITPQASKPVMGIVQDTLVGAYKLTKRDVFLEKEQMMNLLMFLP TWDGKMPQPAILKPRPQWTAAVHSIIIPGNVNMMRTHSTHPDDEDEGPYKWISPGDTKVV IENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVINNWLLYEGHSIGI EDTLADCQTYMGIQDTIQKAKEDVIEIIQKSHNDELEPTPGNTLRQTFENQVNRILNNAQ QQASALAKNSLTEYNNLKAMAVAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPH FIKDDNGPESRGFVENSYLTGLTPSEFYFHAMAGRELLIYEARTETDIIRQLVKGMESVM VHYDGTVRNSAGRLLQFCYGEDGLAAESVELQKMPTVNLSNTVFEKKFKFDPSNEHNLRS MFNEEITRELTSSAEVITEIEHEWEQLYKDREALRQIFPTGENKVVLPCNLQRMIWDVQK IFHINKRAPTDLSPLRVIQGVRDLLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSK RLAEEYRLSSEAFEWLIGKIETRFQQAQAQPGEMVGALAAQSLGQPATMDVDCTWRYTMR VRDLCAFVLTTFDFSILREKRNCQKSNIQKLCAAYKTTTFGQSFRRHRWGIRLVTPLL NT seq 3417 nt NT seq  +upstreamnt  +downstreamnt atggatactttaggatcagactcgaaagccaccatccggctggtgaaaaaagtccaactt ggcatcttgagtccagatgaaatccgaagaatgtctgtcacagaaggtggcataattcat ccttatatttatgaaggcggaaagcgtaaattgggtgggctcatggatcccagacaggga gtagttatacggaaagcaaagtgccagacttgcgatggaaccatcaatgaatgcccagga cattttggtcacatcaatctggccaaaccagtctaccatgttggattctttgagaaaaca atagaaatccttcgctgtgtgtgttattattgctcaaaacttctggtgaaccccaacaat ccaaaattcaaggagattttggtgaaatccaaagaccaacctctaaagtgtatggcccac gtatatgatctctgcaaaggcataaatatctgtgaagttggtaatggtggatgtggtcgt tacttgccgaaaattcgtcgtcttaaaggatttaaaatcaatggcgaatggaaacatgtc gatgaagactcgcaagaaaagaaaatagttttgacagctgaacgtgtttgggagatcttc aaacgtatttctgacgaagattgtgcaatccttggtatggatcctaaatatgctcgtcca gattggatgatcgtcacatgtttgcctgtacctcctcctgccgttcgtccagctcaaatt attggaatggatcaaattgaaaatgatctcactatgaaactcgccgatattgttagagca aacaataagcttttgggtgccgtacaatctggcgaaatcctcagtgggaaaacaaaaatg cttcagcttcacattgcttctatgatggacagcaaatctactttgcttccggcttattat cacgaatcgacactcccaactcagtcaataaaagaccgccttgaagggagagacgggcgt attcgaggtaacttgatgggcaagcgtgtggattttgctgctcgtactgtaattacgcct gatcccaatctgcgtattgaccaagttggcataccacgaagtatcgcacaaaacatgaca ttccctgaacgcgtggcgccttttaacattgaaaaaatgcaagaattggtccagcgaggg aactcgcagtatcctggagccaagttttgcatcattaaaaaaaacggcgatcgtatcgat ctgagatttccctccaagtcccctgatctccgtctggaatgtggcgacatagttgaaaga catatttgtgacggcgatctcgtcgttcttaatcggcaaccttcgttgcggaaagagggt gtgatgggacatcgtgtaaaagtgctcccctgctcaacgttttgtctaaatccaagcgtt gctacggcctacaacgccaattttgatggcgatgagatgaacctacacgtccctcaaagt atggagacgcgttctgaagtggaaagtcttctcgtctcttcccgtctgatcatcacaccc caggctagtaaacctgtcatgggtatcgtgcaagacacccttgtcggtgcttataaactg acaaagcgcgacgtgttcctcgagaaagagcagatgatgaatttactcatgtttctcccc acttgggatggcaagatgcctcagccagccattctcaaaccgagacctcagtggacagca gctgttcactcgatcatcattcctggaaacgtcaacatgatgcgcacgcattctacccat cctgatgatgaagacgaagggccctacaagtggatctctcctggtgacaccaaagtcgtg atagaaaacggcgagttggtgatgggcattctatgtaaaaagacgctcggtgcttctgct gcctctctgctgcacattattttcatggaattgggtcacgaagtatgcggtcgattctac ggcaacattcaaacggtcatcaacaactggttgctctacgagggtcacagcatcggcatt gaagacacgttagcagattgtcaaacgtatatgggcattcaggacaccattcaaaaggct aaagaagacgtgatagagatcattcaaaagtctcacaatgatgagcttgaacccacacct ggtaacactctacggcagactttcgaaaatcaagtgaatcgtatcttgaacaacgcccaa caacaagctagtgctttagctaagaattctctgacagagtacaataacctcaaggccatg gcggtagctggttccagcggttccagtattaccacctctcaggccattgcctgcgtcggt cagcagaacgtcgagggtcaacgaattccctttggattccgcaagaggactttgccccac ttcatcaaagacgataacggtcccgagtctagaggtttcgtcgaaaattcataccttacc ggcttgacaccttccgagttttacttccacgctatggctggtcgtgaacttcttatttac gaagcaaggaccgaaacggatatcattcgacaacttgtgaagggcatggagtctgtgatg gtccactacgacggcacggtacggaattcggcaggccggcttcttcagttttgctatgga gaagacggacttgctgctgaatccgtcgaacttcagaagatgccgaccgtcaatctttcg aatacagtattcgaaaagaaattcaagtttgaccccagcaatgagcacaatcttcgaagc atgtttaatgaagaaatcacccgtgaattgaccagtagcgcggaagtcatcaccgaaatc gaacacgaatgggagcagttatacaaagatcgcgaagctctacgtcaaattttccctact ggcgagaacaaagtggtgttgccttgtaacctgcagcgcatgatttgggacgtccagaag atattccacatcaacaaacgagcaccgacagatttgagtccacttcgtgttatccaaggc gttagagacctgctagccaaatgcgtcatcgtcgttggcgaagataaattaagcatccaa gccaatcagaacgccacgctcttgttccagtgcctggttcgctctacattgtgttccaaa cgactagcggaagaatatcgcctttcatcggaagcctttgaatggctcatcggcaagatc gaaacccgtttccagcaagcacaagctcaacctggtgaaatggtgggagcactcgcagcc cagtctcttggtcaacctgccacaatggatgtagattgcacttggaggtacacgatgcgc gtacgtgacttatgcgcttttgttcttaccacttttgacttttctattttaagggaaaag cggaattgccaaaagtccaacatccagaaactgtgtgcagcatataagactacgacattc ggacaatctttcagaagacatcggtggggtatccgactagtgacaccactgctgtag

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