Daphnia pulicaria: 124340797
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Entry
124340797 CDS
T08670
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124340797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dpz03021
]
124340797
Enzymes [BR:
dpz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124340797
Transcription machinery [BR:
dpz03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
124340797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
124340797
NCBI-ProteinID:
XP_046649427
EnsemblRapid:
LOC124340797
LinkDB
All DBs
Position
5:4718388..4723910
Genome browser
AA seq
1391 aa
AA seq
DB search
MVKEQYRETDVIRKIAKVSFGIQSPQEIQQQAHIQIVSEKLYLEKSSSNQDSSRTPMHYG
MLDRKMGMNVKDALCGTCGKGLEDCVGHFGYIDLELPVFHVGYFKATINVLQTICKTCSH
VMLTEKMRKIYRAKLRNPSLPYLCKKALRKQIQELCKKVKRCPHCDEMNGVVKKCGMLKI
SYEKFRNAKKPIIEAELVAYDNAVQFNKEIEPMLSSALIKMLNPIEVLHLLERIPDEHIQ
FLLMNPEHGHPKDMILTRVPVPPVCIRPSVVSDFKSGTNEDDLTMKLTEIVFLNGVIVKH
RLLGVTSQKILEDWDFLQLQCALYINSQLSGIPLHMQTNKKSRGLVQRLKGKQGRFRGNL
SGKRVNFSGRTVISPDPNLRIDQVGVPELIAKLLTYPTLVNEANIELMRKLVRNGPDIHP
GAIFLKEKDSKLTRSLKYGNRETLARNLKRGDLIERHMMDEDIVLFNRQPSLHKLSIMCH
RAKILPHLTFRLNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGSKSNLVTPRNGE
LLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVIKLPPPCIQKPAAMWS
GKQIFSLILRPNPGNPIKVNLRTKGKEYSKKNEEFCVNDGFLLVRNSEVLAGCVDKSTIG
SGSKINIFYVLLRDYGEDFAIQAMWKLCRVASYYMMNRGFSIGIGDVTPGKTLLKEKQKL
LDSGYSKCDEYIRLLTIGQLPCLPGCNVEESLESKILKELSGIRDQAGEVCKKELHPSNS
PLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHFKRHSKIPAAKGFVSN
SFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCCQYDSTVRNSTGE
IIQFVYGGDGLDPTYMEAKDRPVDFQRALDHIKAASPYPDEEPLDDIELQQAFNTIMDTD
SFKMLGVDFQHELRVFVESQVKRIKKVRQLFKMEGRSLLTVEKHLERITVGQLVEFCDFS
KEKYERAKIEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINASK
AISTPVISTQLLKDDDPEYARRVKGRIEKTTLGEVTEYFEEVYLPDGCYMLIKLDMNRIR
LLKLEVDASSIRLSLCTGKLKIKPNFVAVVSESIITVKPAPNAKSSTYHVMQHLKEELPK
VVIKGLPTVSRAVINIDDTRKPPRYYLLVEGNNMREVMATYGVQGSSTTSNNILEVSSTL
GIEAAKATIAKEIQLTMESHGMSVDRRHVALLSDLMSCRGEILGITRNGLAKMKESVLML
ASFESTSDHLFDAAYYGQEDEVTGVSECIIMGIPMSIGTGAFKLLYKTGKSVPPKTRPLI
FDVPEYHVPMV
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggttaaagaacagtatcgagaaactgatgtgatcagaaaaatagctaaagtaagcttt
ggaattcagagcccacaagaaatccaacaacaagcccacattcaaatagtgagcgaaaaa
ctgtatctggagaaatcttctagtaatcaagattcttccagaacacccatgcactatgga
atgctggataggaaaatggggatgaatgttaaagatgcactttgtggtacatgtggaaaa
gggcttgaggactgtgtgggacattttgggtacattgatttggaacttccagttttccat
gttggatatttcaaggctactataaatgtcttgcaaacaatttgcaaaacatgctctcat
gtgatgctcactgagaagatgagaaaaatttatcgagctaagctaaggaatccaagctta
ccctatctgtgcaagaaagcactgaggaagcaaattcaagaattgtgcaaaaaagtaaaa
aggtgcccccattgtgatgaaatgaatggtgtggtgaagaagtgtggaatgttgaagata
tcctatgaaaaatttcgaaatgccaaaaaacccatcattgaagcagaattagttgcctac
gataatgctgtacagttcaacaaagagattgaaccaatgttgtcatctgccttgatcaaa
atgctgaatccaattgaagtactgcacctccttgagagaattccagacgaacatatccaa
tttctactgatgaatccggaacatgggcacccaaaggacatgattctcacccgtgttcca
gttcctccagtttgcattcgaccttccgtagtgtccgattttaaatcggggacaaacgaa
gatgatttgacaatgaaactaacagaaattgtcttcctgaatggggtgattgtcaaacac
cgtctcttgggtgtaacaagccaaaagattctagaagactgggattttttgcagttgcaa
tgtgcactttacatcaacagtcaattgtccgggatacctttacacatgcaaacaaacaaa
aaatctcgtggtctagttcaacgcctaaaagggaaacaaggacggtttcgtggaaatctt
tcggggaagcgtgtcaatttctccggaagaacagtaatttcgcctgacccgaatttgcgg
attgatcaagttggcgttccggaattgattgcgaaacttctgacttaccctactcttgtt
aatgaagccaatatcgaattaatgagaaaattggtaagaaacggaccagacatccatcct
ggcgccatttttctaaaggaaaaagattcaaaattgacaagatccctgaagtacggaaat
cgcgaaaccctagctcgaaacctgaagcgcggcgatttgattgaaaggcatatgatggac
gaagatatcgtcttgttcaaccgtcagccgtcgttgcataaactttccattatgtgtcac
cgagccaagattttgccgcacctcactttccgccttaatgagtgcgtctgtacaccctat
aatgcagatttcgacggtgacgagatgaatcttcatcttcctcaaacagaagaagctcgc
gccgaagccttgatcttaatgggaagtaaatcaaatttggtgactccgcgcaacggcgaa
ttactgatagcagctattcaagatttcataactggagcttatttactgacattaaaggat
gctttcttcgatcgagccaagacttgccaaatggttgcatccatgcttgcaggtgacgag
gtgaacatggtcattaaacttccgcctccctgtatccaaaagcccgcagccatgtggtca
gggaaacagatttttagtttgattcttcgacccaatcctggaaatcccattaaagttaac
ttgagaactaaagggaaagaatattctaagaagaacgaagagttttgtgtcaacgacggg
tttctattggtccgtaattctgaggtgttagcaggatgcgttgacaaatctaccattgga
tctggttcaaaaatcaacattttttacgtacttcttcgcgactacggagaggatttcgct
attcaggcaatgtggaaactttgtcgggtagcttcttattatatgatgaaccggggattc
tctatcggcattggtgatgtaactcctggtaaaactttgttgaaagaaaagcaaaaactt
ttggactctggttattccaagtgcgacgaatacattcgtttactcacaattggtcaatta
ccttgccttcctggttgcaatgtagaagaatccttggaatcgaaaatccttaaagaactt
tctggaattcgtgaccaggccggagaagtgtgcaaaaaggagctgcatccgagtaacagc
ccattggtcatgtcaaaaagtggctcaaaaggatcatacatcaacatttctcagatgatt
gcctgcgtaggacaacaagctttaaacggcaaacgagttcccaatggttttgaagaccgt
agtttgcctcactttaagcgacattcaaaaatcccggcagctaaagggtttgtctccaac
agcttttactccggacttactcccacagaatttttcttccacacaatgggcgggcgtgaa
ggattggtggatacagccgtaaaaacagctgaaactggttatatgcaacggcgactagta
aaatcgttggaagacctttgttgccagtacgattcgactgtgagaaactccactggagag
attattcaatttgtttatggaggtgatgggctagatcctacttacatggaagccaaagat
cgcccggttgatttccaacgagctcttgaccatatcaaagccgcttccccttatccggat
gaagaacctttggatgatattgaactgcaacaagctttcaacacaataatggacacggat
tcttttaaaatgcttggagtcgactttcaacatgagctccgggtttttgttgagagccaa
gtcaaacggataaaaaaagtacggcagcttttcaaaatggaagggcgatctttacttaca
gtagaaaaacacctggagcgcataactgttggtcagttagtggaattctgcgacttttct
aaggaaaagtatgaacgggctaaaattgagccaggtaccgccgttggagcactttgcgcc
cagagtattggagaaccgggtactcaaatgacgctcaagacatttcattttgctggtgtt
gcttccatgaacatcacacagggagttcctaggattaaggaaattattaatgcttcaaaa
gcaatcagtacgccagtcatttctactcagcttttaaaagatgatgacccggagtatgct
cgacgagtaaaaggaaggattgaaaagaccacactgggagaagtaacggaatatttcgag
gaagtctatttacccgatggttgttacatgttgataaagttggacatgaataggatccga
ttgcttaaattagaagtggacgcaagttccattcgattgagcctatgcactggcaagctg
aagattaaaccgaatttcgttgcagtggtcagtgaatcaataattactgtcaaaccagct
ccaaacgcgaaatcgtcgacgtatcacgttatgcaacatctgaaggaggagttgcccaaa
gtcgtcatcaagggtttgccaactgtcagtcgagctgttatcaatattgacgacacgaga
aagccaccaagatattacctacttgttgaaggtaacaacatgcgggaagtgatggcgact
tacggtgttcaagggtcctcgactacatcaaacaatattttggaagtttccagtacttta
ggaatcgaagctgccaaagcaacgattgctaaagaaattcaactcaccatggaaagccac
ggcatgagtgttgatcgtcgtcacgtcgcccttctttcagatctgatgagttgtcgtggt
gaaatcttgggcatcacgagaaacggattggctaaaatgaaagaatcggttctgatgttg
gcctcattcgaaagtacctcagatcatttgttcgatgcagcgtactacggccaggaagat
gaggttactggtgtaagtgaatgcatcatcatgggaataccaatgtcaatcgggacaggg
gcttttaaattactgtacaaaaccggaaagtcggttccacctaaaacaagaccacttatt
tttgatgttccagaatatcacgtccctatggtataa
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integrated database retrieval system
