Daphnia pulicaria: 124348852
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Entry
124348852 CDS
T08670
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
dpz
Daphnia pulicaria
Pathway
dpz03440
Homologous recombination
dpz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124348852
03460 Fanconi anemia pathway
124348852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpz03400
]
124348852
Enzymes [BR:
dpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124348852
DNA repair and recombination proteins [BR:
dpz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
124348852
FA (Fanconi anemia) pathway
Downstream FA components
124348852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
F-box_4
Motif
Other DBs
NCBI-GeneID:
124348852
NCBI-ProteinID:
XP_046655149
EnsemblRapid:
LOC124348852
LinkDB
All DBs
Position
7:complement(16668959..16701101)
Genome browser
AA seq
1041 aa
AA seq
DB search
MATVAGPDGRLHYVYTISGVRVEFPAKAYPSQIAMMDKVIRGLQRGQHCLLESPTGSGKT
LALLCASLAWQRAEAENVRKFNEAVEATARASLKTLKTEIQSTDGGPDMKMGNWNAEAVK
KEPTAPKVKVESSPASDMSAYYSDDNSDDDFKMPTKKRTKISKSPPEKPLVAIRPAGSSA
PIKMEDVKTERVMLSGDGSVESPVEQPFIQRKQKIPKIFFGTRTHKQITQVVKEFRRTVY
CNTPMGVLASREHTCIHPEVSRSANKNEGCKILNDRRLAKQDPQQKGGCSYRWQGKDKLK
TQAQIRNYGLVSGWDIEDLVSLGRRIRVCPYYASRDMSEQAQIVFSPYNYLIDPRVRQSM
KIPINDNIIILDEAHNIEDSARESAGGSWSQEDFRLALNDCEKIGNRHPTMEKEIDRLAK
FSSYMMQWIGKHATNMKSVGFDREVHVMTGTEFVANLSVDGYGPEMLVELKAIIDYIFNE
QLESDWNDKEGSQDPQLSAATQTLLEGFLMIMDLMLNGNQIHRDDYRAVVVRTVERKQKK
GPGSSFFGKANIASQWTYALNLWCLNSAVVMHEIKESTRSIIVTSGTLSPLASYQSELDI
DFKLTLEANHVIPAKRVWIGTISQGPRNTLLNGTFKVTGTFEYQDELGRLALSVCQTIPH
GVLCFLPSYSLLEKLVTRWQDTGLWQHLSNYKTIVCESRDSRDFEETLKSFYSAIEDSVN
ALSCLDLDGSGDGSECPSKKTGDVPSGALMLAVCRGKVSEGLDFTDNNARAVICVGIPFP
NFKDTQVELKRQYNDKLSASTPLLNGSEWYEIQAFRALNQALGRCIRHKADWGAILLVDD
RFAKTPRYVNQLSKWVRSSIRHFHCFPPMLNSLKEFADNFVAEDAAALVASQQQLLSSTQ
EESQSFTPMVVSSSPYFTKPAVSSPNVVYLSEDENDSILSVNDSLTAEISPLKTRPVQMN
ASPVKPLLTNKISPTLPVQSNEMKTTPVRHPVSRIKKPFATLLGNSNKLSLSQRKLAAEN
GSHYFQDMNPASANVKPDFDS
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggccactgtcgctggtccggacggccgccttcactatgtctacacaatcagcggtgtc
cgtgtcgagtttccggccaaggcttatccgtcgcagattgccatgatggataaagtgatt
cgaggattgcagcgtggccagcattgtctactggagagtccgaccggatccggcaaaaca
ctggccttgttgtgcgccagcctggcgtggcagagagcggaagcagaaaatgtcaggaag
ttcaacgaagccgtcgaagcgacagcgcgggccagcctcaaaacgctcaaaaccgaaatt
caatcaacggatggagggccagatatgaaaatgggaaactggaacgcggaggccgtcaaa
aaagaaccgaccgctccaaaagtcaaagttgaatcctcgccggccagtgacatgtcggcc
tattactcggacgacaacagcgacgacgattttaaaatgccgaccaagaaaagaactaag
atttcgaaatcgccgccagagaagccgttggttgccattcgtccggctggatcgtcggct
ccaatcaaaatggaagacgtgaagacggaaagagtgatgttgtccggcgatggaagcgtc
gagtcacctgtcgaacagccgttcattcaacggaagcaaaagattcccaagatctttttt
ggaacgcggacgcacaagcaaatcactcaagtggtcaaagaattccgccgcaccgtctac
tgcaatactccgatgggcgtactggccagcagggaacacacctgcatccatccagaagtg
tcgcgttccgccaacaaaaacgaaggttgcaaaatactaaatgaccgacgattggccaaa
caggatccgcagcagaagggtggttgttcttaccgttggcaaggcaaagacaagctcaag
acgcaagctcaaattcgtaactatggactggtcagtggttgggatatcgaagatttggtg
agtttaggccgtcgcattcgggtttgcccatattacgcttcgcgcgacatgtctgagcaa
gcgcagatcgtctttagcccttacaattacctgattgatccgagggtacgtcagtcgatg
aagatcccaattaatgacaatattatcattctcgacgaggctcataacatcgaggattct
gcgcgcgaatcagctggaggttcttggtcacaagaggattttcgcttggctctcaatgac
tgcgagaaaatcggtaatcggcacccgacgatggaaaaagaaatcgatagactggccaaa
ttctcgtcttacatgatgcaatggatcggcaaacacgccacgaacatgaagagtgtcggc
ttcgaccgggaagttcacgtgatgaccggcacggaatttgtagccaatttgagcgtcgac
ggctacggtcccgaaatgctggtcgagctcaaggcgataatcgattatatcttcaacgag
caactcgagtcggattggaatgacaaagagggcagccaggacccacaattgtcggctgcc
actcaaactctcctcgaaggattcctcatgattatggatttgatgttgaacggtaatcaa
attcaccgcgacgactaccgggccgtagtcgttcgcactgtcgagaggaaacagaaaaaa
ggacctggatcgtcatttttcgggaaagccaacatcgcctcgcagtggacatacgccctc
aatttatggtgtctcaattcggctgtcgtgatgcatgaaatcaaagagagtacgcgatct
atcatcgtcacatcaggcacgctgtcacccttggcctcttatcagtcggaactcgatatc
gatttcaagctcactctggaggccaatcatgtcattccggccaaacgtgtgtggataggg
accatctcgcaggggcctaggaacactctgctcaacgggacattcaaggtgaccgggact
tttgaatatcaggatgaactcggccggttggctttgtccgtctgccagacgattccgcac
ggtgttttatgcttcctgccctcttacagtctattggagaagcttgtcactcgatggcag
gacacgggtctatggcaacacctttccaattacaaaaccatcgtttgcgagtcgcgagat
tcacgcgactttgaggaaacgctcaagagtttttactcggccatcgaagacagcgtaaat
gctctgagttgcttagacttggacggctcgggtgatgggtctgaatgcccgagcaaaaaa
actggtgacgtacccagcggcgctctgatgttggctgtatgtcgaggcaaagtcagcgaa
ggacttgactttaccgataacaatgcccgggccgtcatttgtgtgggaatccctttccca
aatttcaaagatactcaagtcgaattgaaacgccaatacaatgacaaattgtccgcctct
acaccgttactcaacggaagtgagtggtacgagatccaagccttcagggcattgaatcaa
gcactaggacgctgtatcagacacaaagccgattggggagctattctcctagtggatgat
cgttttgcaaaaacgccacgatacgtgaaccaattatccaaatgggtccggtcttctatt
cgtcacttccactgctttccgcccatgttaaactcgttgaaggaatttgccgataacttt
gtagcagaagacgctgctgctttggttgccagtcagcaacagctactttcatctactcaa
gaagagtcgcaatcgttcacccctatggtcgtctccagctcaccttatttcaccaaaccc
gctgtgtcgtcaccgaatgtggtttatctttccgaggatgaaaacgattccattctctct
gtgaatgatagtctcactgctgagatttcgccgttgaagacacgtccagtgcagatgaac
gcatcaccagtcaagcctttgttgactaacaagatatcgccgacgttgcctgtgcagtcg
aacgaaatgaagacaactcccgtcaggcaccctgtgtctagaatcaagaaaccgttcgcc
actcttttggggaattcgaataaattatcgctttctcagcgtaaattggctgccgagaat
ggatctcactatttccaggatatgaatccagcttccgcaaacgtcaaacctgattttgat
tcttaa
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