Danio rerio (zebrafish): 100003537
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Entry
100003537 CDS
T01004
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X3
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
dre01001
]
100003537 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
dre04054
]
100003537 (ciita)
Enzymes [BR:
dre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
100003537 (ciita)
Protein kinases [BR:
dre01001
]
Serine/threonine kinases: Other
TAF1 family
100003537 (ciita)
Pattern recognition receptors [BR:
dre04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
100003537 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
RsgA_GTPase
AAA
Pox_A32
Roc
nSTAND3
AAA_25
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
100003537
NCBI-ProteinID:
XP_001343072
ZFIN:
ZDB-GENE-071116-6
Ensembl:
ENSDARG00000090851
UniProt:
E7F3F4
LinkDB
All DBs
Position
3:complement(26908977..26928019)
Genome browser
AA seq
1044 aa
AA seq
DB search
MDYLFETDGEANFIDPDPTLELPDSVLGEYLQSLLDGSIEETFDPTFFEDPNYSSLHTTD
DKDTNCIPEKTSKVARPKKRKATTIDPQQIPCKQAIVVPESPSYELTPNITSGTEGSFHL
SPYQPVFSFPISSPSLPSSALQFIQTISPLTSPLIGTVVQTGSTYVLVSPQSVSPGTQII
PLSPADGTVAPPELTGFVLPVGSSSGLTSVSVDTSPIKEGNPDKNTESPSPKLKNKVRPK
APECVKDYIHRLKSHLRDVCSTMRGGMGMQSHYVDAHLVQRKLLIKSGKNANKCLEKELV
VLSDSERKKAKLDTSQLFHNLDSKSKQSFAFLGKSGVGKTTFIQRLCLDWSNSGLPQFQF
VFLMNCKILDFKQSNYSLKTLLFDFSTSPHCEDSNAAFKHILSCPDEVLIIFDSFDHIKD
LEGLLQSPAKSHTDTKYTIKQLFSGLFQKEILSGCTLLIATRPKDVLNQVLRKMDCLLEI
WGFSPEDIELYTSKYFEEASLRESALQKIKNQGYMFSLCSNPLLCWATCFLLKHQDGEDL
PSTLTDLYQRVTSKHLELASIGNSTKKKQLDTPQLCKMAWEGFKNHDTHVNLVKSTELLD
CALKSGILIPYKTSEQEENHFADLFTQNFLSALHLVQSKQVNDKTVVANTMVQHKKRKVQ
GESQDVLQRFITGLIFQKTASGLSIIDSSVDLKAKRKAVEAHLESMKPKDLVPARLLELF
HCVYETCSVKFAQGLVKNLPDDLSFCGTQLSPSDVYVICHILQHASAMKRTFTINLQDTC
IPIRGLKELVGLKCIASFWAHAEDTIDLWEDLHQSNDELNLKSAIEKFTLNPLKATQGYH
IESLPVLVQIHREKKLPTSELVPALDEGVPALRHLQKLEFGLGVQNGPELFPKVIEVLPS
LQSLLCLDLDKNHIGDSGAEKLSGVLHFLECLKLLILSQNLIGDAGVGKLAQALASVPSL
QTLRLYGNAIADSGAEHLALALPDMKSLQDLDVKFNKFTDIGATKLSAALKNCPGMKSLE
LWNNCIPYGVFEHLRLQDSRIKSL
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggactatctctttgaaacagatggtgaagcaaattttattgatccagatccaacgtta
gagctacctgacagtgttctcggtgaatatcttcagtccctcctggatggttcgattgaa
gaaacttttgatccaaccttcttcgaagatcccaattactcatctttacatacaacagat
gacaaagatacaaactgcataccagaaaaaacatctaaagttgcccgccccaaaaaacga
aaagctactaccatagacccacagcaaattccctgcaaacaagcaatagttgtccctgaa
agtccctcatatgaattgacgcccaacatcacatctggaactgagggtagtttccatttg
agtccataccagcctgtgttcagttttcctatcagctcccctagtctgccctctagtgca
ctacagttcatccagaccataagcccgctcacgtcacctctaattggcactgtggttcag
acaggatccacatatgtgcttgtttcgcctcaaagtgttagtccaggcacacagataatt
cctctttcacctgctgatggtacggttgccccacctgagctcactggttttgtactccca
gttggctcgtcctcaggtctgacatcggtttctgtagacacaagccctattaaagaagga
aacccagacaagaatacagagtccccatctccaaaactaaaaaacaaagtccgtcccaaa
gcgccagagtgtgtcaaagactacattcatcgcttaaaatcacacctgagagatgtctgc
agcactatgcgtggagggatgggaatgcagtcacactacgtggatgcacatctggttcag
aggaaacttcttatcaaatctgggaagaatgcaaacaagtgtttggagaaagagctggtt
gtcctcagcgattcagagcgaaagaaagcaaagctggacacaagtcagttgtttcataac
cttgactccaaatccaaacaatcatttgctttcctcggaaaatccggcgtggggaaaacc
acattcattcagcggttgtgcctggactggtcaaacagcggcctgcctcaatttcagttt
gtttttctcatgaactgtaaaatcttagacttcaaacaatccaactacagcttaaaaact
ttactgttcgacttttctacatctcctcactgcgaggactcaaatgctgctttcaaacac
attctgtcctgtcctgatgaagttctcattatctttgacagctttgatcatataaaagac
cttgaggggcttcttcagtcccctgctaaatcacacacagacactaaatacaccatcaag
cagctgttttcaggtttgtttcaaaaggaaatcctctcgggctgcacacttctcatcgcc
acgaggcctaaagacgttttaaatcaggtgctgcgaaaaatggactgccttttggagatt
tggggcttctctcctgaggatattgaattgtatacatccaaatattttgaggaagcttcc
ctccgagagagtgcactacaaaagattaagaatcaagggtacatgtttagcttatgctct
aacccgctgctttgctgggctacctgcttcctgctcaagcatcaggatggtgaggatttg
ccttcaactctcacagacttgtaccaaagagtgacctccaagcatctggaattggctagc
attggaaacagcacaaagaagaaacaactcgacaccccgcagttgtgtaaaatggcatgg
gagggcttcaagaatcacgatacacacgtcaaccttgtcaaatccacagaactgctggac
tgcgctctgaaaagtggaatacttataccttataagacatctgagcaagaggaaaaccac
tttgctgaccttttcactcagaacttcctaagtgctttgcatttggtgcaatccaaacag
gtcaatgataaaacggtggtggcaaataccatggtgcagcacaaaaaacgaaaggttcag
ggagaatcgcaggacgtcctgcagaggttcatcaccggcttaatcttccagaagacagca
agtggactcagcataatagacagcagtgtggacttaaaagccaaaaggaaggccgtcgaa
gctcatttagagagcatgaaacccaaagatttggttcctgccagattacttgaattgttt
cactgtgtttacgagacctgcagtgtcaaatttgcccaagggctagtaaagaacctgccc
gatgatctgtctttctgtgggacccagctttccccatcggatgtgtacgtgatatgccat
atccttcaacatgcaagcgcaatgaagcggaccttcaccattaacctgcaggacacatgc
attcccatcagaggcctgaaagagcttgtgggtctcaaatgtatcgcatccttctgggcg
catgcagaagataccatcgacttatgggaggacttgcatcaaagcaacgatgaactgaac
ttgaaaagtgcaattgagaaattcaccttgaacccattaaaggccacacaagggtatcac
atagagagcctgcctgtcctcgtccagattcacagagaaaagaagctgcccacaagtgaa
ctggtgcctgcactggatgaaggtgtaccagctctccggcatcttcagaaactggaattt
ggccttggagtgcagaatggtcctgaacttttccctaaagtcatagaggtcctgccttct
ctgcagtctctcctgtgtctggaccttgataaaaaccatattggagactctggagcggag
aaactgtctggcgttttacattttttggaatgtctgaaattgctcatcctgtctcagaat
ttaattggagatgctggagtgggaaaactggctcaagctctggcatcagttccttctcta
cagacactcagactgtatggaaatgcgattgctgacagtggtgctgaacatctggccttg
gctttaccagacatgaaatcactgcaagaccttgatgttaagttcaacaagttcaccgac
attggagctacaaagctcagtgctgcgctgaaaaactgccctggaatgaagtctttggag
ctgtggaataactgtataccctatggagtttttgagcacctccgtcttcaagattcacgg
attaaatcactttaa
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