KEGG   Dinoroseobacter shibae: Dshi_2256
Entry
Dshi_2256         CDS       T00612                                 
Symbol
ribD
Name
(GenBank) riboflavin biosynthesis protein
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
dsh  Dinoroseobacter shibae
Pathway
dsh00740  Riboflavin metabolism
dsh01100  Metabolic pathways
dsh01110  Biosynthesis of secondary metabolites
dsh01240  Biosynthesis of cofactors
dsh02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:dsh00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    Dshi_2256 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Dshi_2256 (ribD)
Enzymes [BR:dsh01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     Dshi_2256 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     Dshi_2256 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam
Other DBs
NCBI-ProteinID: ABV93992
RoseoBase: Dshi_2256
UniProt: A8LR69
LinkDB
Position
complement(2378215..2379312)
AA seq 365 aa
MSDDLRWMQVALTLGRRGLGQSWPNPAVGCVLVAPNGRVVGRGRTQSGGRPHAEVVALAQ
AGAAARGATAYVTLEPCAHHGQTGPCCDALIAAGVGRVVTALEDPDPRVAGQGHSRLRAA
GVAVTEGVGRAAAREDQLGFLNRVTLGRPMVTLKLALTLDGRIATARGESQWITGAEARR
YGHALRARHDAVLIGAGTARTDDPTLTVRGVGVVRQPVRVVASRDLDVPIPSRLSQSVTA
DAPVWLCHGGEAPAERIARARAAGLKCVEVAAEAEGVSVESLLRTLAQRGLTRVYCEGGG
AFAAGLLRAGCVDRLAVFSAGCVIGADGLPGLGDLGVNLLADAPRFRRLGVRQVGGDVLT
EWART
NT seq 1098 nt   +upstreamnt  +downstreamnt
atgtccgacgacctgcgctggatgcaggttgcgctgaccttggggcggcgcggtctcggc
cagtcttggccgaacccggcggtcggctgtgtgctggttgcgccgaacggacgcgtggtc
gggcgcggtcgcacccagtccggcgggcgcccccatgcggaggtcgtggccctcgcgcag
gccggggcggcagcgcgcggtgcgacggcctatgtgaccctcgaaccctgtgcccaccac
ggacagaccggcccgtgctgcgatgcgctgatcgctgctggtgtggggcgtgttgtcacg
gcgctggaagatcccgatccacgtgtcgcagggcaggggcatagccgcctgcgcgccgcc
ggcgttgccgtcaccgaaggcgtcgggcgtgctgcggcgagggaggatcagttgggcttc
ctgaaccgtgtaacccttggccgtcccatggtgaccctgaaactggcgctgacgctcgac
ggccgcatcgcaaccgcgcgaggggaaagccaatggatcacgggggccgaggcgcgccgg
tacggtcatgccctgcgggcacggcatgacgccgtgctgatcggggccgggactgcgcgg
acggatgatcccacgttgacggttcgcggtgtcggcgttgtgcggcaaccggtgcgggtg
gtcgcgagccgggatctggacgtgccaattccctcccgcctctcccagagcgtgacagcc
gacgcgccggtctggctctgccacggtggcgaggcgcccgcggagcggatcgcgcgggcg
cgtgcggcaggactgaagtgtgtggaagtggccgcagaggccgaaggcgtctctgtcgaa
agtttgctccggaccctggcgcagcggggtctgacgcgcgtttactgcgagggcggcggc
gcatttgcggcggggttgctgcgggcgggctgcgttgacaggctcgccgttttttccgcg
ggctgcgtgatcggggcggacgggttgccggggctcggtgatcttggggtgaacctgctg
gcagatgcgccgcgcttcagacggctcggggtgcggcaagtaggcggcgatgtcctgacc
gaatgggcccgtacctaa

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