Dinoroseobacter shibae: Dshi_3474
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Entry
Dshi_3474 CDS
T00612
Symbol
pcaB
Name
(GenBank) 3-carboxy-cis,cis-muconate cycloisomerase
KO
K01857
3-carboxy-cis,cis-muconate cycloisomerase [EC:
5.5.1.2
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh00362
Benzoate degradation
dsh01100
Metabolic pathways
dsh01120
Microbial metabolism in diverse environments
dsh01220
Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09100 Metabolism
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
Dshi_3474 (pcaB)
Enzymes [BR:
dsh01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.2 3-carboxy-cis,cis-muconate cycloisomerase
Dshi_3474 (pcaB)
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Gene cluster
GFIT
Motif
Pfam:
Lyase_1
DUF3209
Motif
Other DBs
NCBI-ProteinID:
ABV95207
RoseoBase:
Dshi_3474
UniProt:
A8LPE2
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All DBs
Position
3657613..3658659
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AA seq
348 aa
AA seq
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MAAGGQNRLFDGLFADPEIAALFSAETMFAHFRHYEMALTEAQGAVGRVKDAARIAARIA
KFEIAPDAISDRVTQDGVPVPAYVAALEAALGVDAAAVHLDATSQDLMDTSLALSLRRLS
EVLAARLDRVIVALDGLQAAQGARTLMGRTRMQAALPIPVATRLEAWQTPLLRARDRFPE
ARAGVEQLQFGGPVGQRSPQMAAIAERLAKALDLPPPGPVWHSTRDGVVGYGTWLALVTG
SLGKMGQDIALMSQQGLDDARLSGGGTSSAMPHKQNPIAAETLVTLARFNAVQIGGLHQA
MVHEQERSGAAWALEWMILPQICEATGAALRHAAALLDSIETLGKKPV
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgggggccaaaacaggctctttgacgggctttttgccgacccagagatcgcg
gcgctgttctcggcagagacgatgttcgcgcattttcggcactacgaaatggctctgacc
gaggcccaaggtgcggtggggcgggtgaaagatgccgcccgcatcgcagcccgaattgcg
aagttcgagatcgcgcccgacgctatctcggatcgcgtaacgcaagacggtgtgcccgtg
ccggcctatgtcgcggcgttggaagcggcgctgggcgtggatgctgcggcggtgcatctc
gacgccacgtcgcaggacctgatggacacgagcctcgcgctgagcttgcgcaggctgagc
gaggtgctggcagcgcggcttgatcgggtgatcgtcgcgctggacggactgcaagcggcc
caaggtgcgcggaccctgatgggccgcacccggatgcaggccgccctgccgatcccggtc
gcaacacggctggaggcttggcagacaccgctcctacgtgcccgggaccgatttccggag
gcgcgcgccggggtcgaacagttgcagttcggcggcccggtggggcaacggtccccccag
atggcagccattgccgaaaggctggccaaggcactcgatctgccgccgccgggcccggtc
tggcacagcacaagggacggcgttgtgggctacggcacctggctcgcgctggtgaccgga
agcctcggcaagatggggcaggatatcgcgctcatgtcccagcagggattggacgatgcg
cggctctccggcggtgggaccagttctgccatgccacacaagcagaacccgattgccgcg
gaaacccttgtcacccttgcgcggttcaacgcggtgcagatcggcggcctgcatcaggct
atggtgcatgaacaggaacgctccggcgcagcgtgggcgctggaatggatgatcctgccg
cagatatgcgaggccaccggcgcggccttgcgccatgcggcggccctgcttgacagtatc
gaaacccttgggaaaaagcctgtttaa
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