KEGG   Dichomitus squalens: DICSQDRAFT_133345
Entry
DICSQDRAFT_133345 CDS       T03133                                 
Name
(RefSeq) RPB5 subunit of DNA-directed RNA polymerase
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
dsq  Dichomitus squalens
Pathway
dsq03020  RNA polymerase
dsq03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dsq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DICSQDRAFT_133345
  09124 Replication and repair
   03420 Nucleotide excision repair
    DICSQDRAFT_133345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dsq03021]
    DICSQDRAFT_133345
   03400 DNA repair and recombination proteins [BR:dsq03400]
    DICSQDRAFT_133345
Transcription machinery [BR:dsq03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     DICSQDRAFT_133345
  RNA polymerase III system
   RNA polymerase III
     DICSQDRAFT_133345
  RNA polymerase I system
   RNA polymerase I
     DICSQDRAFT_133345
DNA repair and recombination proteins [BR:dsq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      DICSQDRAFT_133345
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat R3H Toprim_2
Other DBs
NCBI-GeneID: 18835042
NCBI-ProteinID: XP_007362401
JGI: 133345
LinkDB
Position
Unknown
AA seq 211 aa
MASPGEQEESARLWKVNRTIHELVKDRGFQVADDEINMDLATFRSHYASQSGTVDRSQLN
FFTNHRDNPMLQIFIFFTDEKSVGVKTMRKLLGILEEKNIQQGIIVFPGNMTPSARKVIV
AMASQYKLEEFSESDLLVNITHHTLVPRHELLTPEQKKELLETYRLKETQLPRIQLADPV
ARYYGLKRGNVVKITRPSETSGRYASYRICF
NT seq 636 nt   +upstreamnt  +downstreamnt
atggccagccccggcgagcaagaggagtccgcgaggttatggaaggtgaataggactata
cacgagttggtcaaggacaggggattccaggtcgccgacgacgaaataaacatggactta
gccacctttcgctcacactacgctagtcaaagcggaacagtagaccggagtcagctcaac
ttcttcacgaaccatcgggacaaccctatgttgcagatattcattttcttcaccgacgag
aagagcgtgggagtcaagacaatgcgaaaattgcttggaatccttgaagagaagaacatc
cagcagggaattatcgtgttcccgggcaatatgactccttctgcgcggaaagttatcgta
gccatggcgtcacaatacaagctggaggagttctcggagtccgacttactggtcaacatc
acccaccacacgctagtgccgaggcatgagcttctcacgccagaacagaagaaggaacta
ctggagacctaccggctgaaggagacgcaacttcctcgtatccaactggccgatccggtt
gcgcgctattacggtcttaaacggggcaacgttgtcaaaatcacccgcccgagtgagacg
tccggacgttacgccagctaccggatttgtttctag

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