Dichomitus squalens: DICSQDRAFT_164685
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Entry
DICSQDRAFT_164685 CDS
T03133
Name
(RefSeq) DNA-dependent RNA polymerase II second largest subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
dsq
Dichomitus squalens
Pathway
dsq03020
RNA polymerase
dsq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DICSQDRAFT_164685
09124 Replication and repair
03420 Nucleotide excision repair
DICSQDRAFT_164685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsq03021
]
DICSQDRAFT_164685
03400 DNA repair and recombination proteins [BR:
dsq03400
]
DICSQDRAFT_164685
Enzymes [BR:
dsq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DICSQDRAFT_164685
Transcription machinery [BR:
dsq03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
DICSQDRAFT_164685
DNA repair and recombination proteins [BR:
dsq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
DICSQDRAFT_164685
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
MRNIP
Motif
Other DBs
NCBI-GeneID:
18838366
NCBI-ProteinID:
XP_007360329
JGI:
164685
LinkDB
All DBs
Position
Unknown
AA seq
1222 aa
AA seq
DB search
MSQDFDATQSFYDDGYGVDGEVEDEYEEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQ
NTMQELVDENSDLILDQADQHTGHDGDVTRRYEIKFGQIYLSRPTVTEADGAVVPVFPQE
ARLRNLTYSAPLYIEMKKRILIGREDQEGSGDMVWEVQRDDDPEDTRKVWIGKVPIMLRS
TYCILHELGDKELFDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISF
LAEIRSAVEKGGKTISQFQVKLYHRSQERSLGNVMKATIPYIKVDIPIWVVFRALGVISD
RDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNRERRLRYAQE
ILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLA
NLFRMLFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSLATGNWGDQKKSMS
SKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACG
LVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTPCTKVFVNGVWMGVHRDPVK
LVSTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKKHIESL
VRAKDDPTFNYNWDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEEE
DPSARLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIFLT
NFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQ
SSIDRGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGT
NVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKF
VKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTI
GHLVECLLSKLATLIGNEGDATPFTDLTVESVSQYLRQKGYQSRGLEVMYHGHTGRKLQA
QVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGV
AAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTACSQIYIPYAAKLLF
QELQSMNIAARLYTTSTGRIRD
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagattttgacgctacgcaatctttctacgatgacggctatggcgtggacggc
gaggtggaggacgagtacgaggagatcacccaagaagactgctggacggttatcaccagc
ttcttcgaccaaaagggtctcgtcagacaacaactagactccttcgatgaatttgtgcag
aataccatgcaggaactcgtggacgagaactcggatctcattctcgaccaggcggaccaa
catacgggacacgacggggatgtaacgcgtcgctatgagatcaaattcgggcaaatctat
ctttcgaggccaacggttaccgaggcggatggtgctgtagtccctgtgttcccacaagaa
gcgcgtttgcgtaacctcacgtactccgcgccactctacattgaaatgaagaagaggatc
ctgattgggagagaggaccaggaagggagcggggacatggtctgggaggtgcagcgggac
gatgaccctgaagacacaaggaaggtgtggatagggaaggtgcccatcatgttgcgttcc
acctactgcatcctccacgaattgggagacaaggagctcttcgatctcaacgagtgccct
tacgattctggagggtacttcatcattaacgggtctgagaaggtgctcattgcccaggag
cgcatggcgacgaaccacgtatatgtcttcgctaaggcgcagccgtccccgatcagcttc
ctcgcggaaatccgcagtgcagtagagaagggggggaagaccattagtcagttccaggtg
aagctgtaccacaggagccaagaacgttcgttagggaacgttatgaaggccacgatcccc
tacatcaaagttgacatacctatctgggtcgtcttccgcgctcttggagtcatatccgac
cgcgatatcctcgagcatatctgctacgatatgcaagacaaccagatgctggagatgctg
aagccttgcattgacgaaggtttcgtcattcaagatcgtgagattgcgctggactacatc
ggtaaccgtggaacgacaaccggtctcaatcgtgaacgtcgtttacgctatgcccaggag
atcctgcagaaggagatgttaccacacgtctccatggccgaaggttccgagtctaagaag
gcgtacttcttcggctacatgattcatcgtctactcctcgccgctctcgagcgcagagac
ctcgacgaccgtgatcacttcggcaaaaagcgtctcgatctcgcaggccctcttctggcg
aatctgttccgcatgctgttccgcaagctcaccaaggatgtttaccgctatctccaaaag
tgtgtcgagacgcacaaggagttcaacatttcgctcgccgtcaagcataacaccatcacg
aatggtctcaaatattcgcttgccacaggcaactggggagaccagaagaagtcgatgagc
tcgaaggctggcgtatcgcaggtgctcaatcgctacacctatgcatcgacactttctcac
ttgcgacgctgcaacactccgcttggtcgcgagggcaagatcgcgaaaccccgtcagctg
cacaatactcactggggtatggtctgccccgccgagacgccagaaggacaagcctgtggt
ctcgtcaagaacctgtcgctcatgtcgtgtatatccgtcggtaccctctctgcgcccgtc
attgagttcttagaggagtggggtttggaatctttggaggagaacgctcacgcctcaacg
ccgtgcacgaaggtgttcgtcaacggtgtttggatgggtgtccaccgagaccctgtgaag
ctcgttagcactctccggaagcttcgtcgaaaagacgacatcaactgcgaagtgtctgtc
gtccgcgacatccgagagcgcgagctccgtctctacacggatgctggccgtgtctgtcga
ccactcttcatcgtcgagaatcagcagctcctcatccagaagaagcacatcgagagcctg
gtccgtgccaaggacgacccgacgttcaactacaattgggacagcctgctcaaggacggt
gtcatcgagctactggatgctgaggaagaggagacggtcatgatctgcatgacaccggaa
gacttggaaaactcgaggctgcaggctgccggtattgacccacatgcagacgaggaagaa
gacccttcggctcgcttgaaggcgccgacatcagctcatacatggacgcattgcgagatt
cacccgagtatgattttgggtgtctgtgccagtatcatccccttccctgaccacaaccag
tcgccgcgtaacacgtaccagtctgccatgggcaaacaggccatgggtatcttcctcacg
aacttcctcattcgtatggacacgatggcgaacatcctctactacccccagaagccgctc
gcgacaacgcgttctatggaatacctgcgcttccgagagcttcccgcaggtcagaacgcc
atcgttgccattctctgctacagcggctacaaccaggaagattccgtcatcatgaaccag
agctctatcgaccgaggtttgttccgcagtatctactaccgaagctacatggacttggag
aagaagagcggtgtccagcagctggaggagttcgagaagcccactcgcgacacgacgctg
cgtatgaagcatggtacgtacgacaagcttgaggacgatggtctcatcgcgcccggcaca
aatgtcaatggcgaagatatcatcatcggcaagactgcccccatcccgccagacagtgag
gaactcggccagcggacacgtacacatacgaagcgcgacgtctccacgccgctcaagagc
acggaacagggtatcgtcgatcaggtactcatcacaacgaacgccgagggccagaagttc
gtcaagatccgtgtacgctctacacgtatcccgcagattggtgacaagttcgcctctcgt
cacggtcagaagggtaccatcggtatcacctaccgccaggaggacatgccgttcaccgcg
gagggtatcacgcccgacatcatcattaacccccacgccatcccctcccgtatgaccatc
ggccacttggtcgagtgcctactctccaagctcgcgacgctcatcggaaacgagggcgac
gcaacgccgttcaccgacctcaccgtggagtccgtctctcagtacctgcgccagaagggc
taccagtcccgaggtttggaggttatgtaccacggacacaccgggcgtaagctccaggcg
caagtctacctcgggccaacttactaccaacgtctgaaacatatggtggacgataagatc
cactcgcgtgcgcgtgggccggtccagattctcacgcgccagcccgtcgaaggtcgtagt
cgtgacgggggtctgcggttcggagagatggagcgtgattgtatgatttcgcatggtgta
gcggccttcctgaaggagcgtttgttcgaggctagcgacgcttaccgactgcatgtctgt
gacatttgtggcctcacggctattgccaacctcaaaaagcaaacgttcgagtgtcgagcg
tgcaagaacaagactgcttgttcacagatttacattccttatgccgcgaagctgctcttc
caggaattgcaatctatgaacatcgcagcacggttgtacacgacgtcgacgggacgaatt
cgggactaa
DBGET
integrated database retrieval system
