Drosophila serrata: 110180408
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Entry
110180408 CDS
T06108
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dsr
Drosophila serrata
Pathway
dsr03020
RNA polymerase
dsr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110180408
09124 Replication and repair
03420 Nucleotide excision repair
110180408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsr03021
]
110180408
03400 DNA repair and recombination proteins [BR:
dsr03400
]
110180408
Enzymes [BR:
dsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110180408
Transcription machinery [BR:
dsr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110180408
DNA repair and recombination proteins [BR:
dsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110180408
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
110180408
NCBI-ProteinID:
XP_020803723
LinkDB
All DBs
Position
Unknown
AA seq
1889 aa
AA seq
DB search
MSTTTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVSPQNP
KIKEIMLKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQPPDPNKKPGHGGCGHYQ
PSIRRTGLDLTAEWKHANEDSQEKKIVVSAERVWEILKHITDEECILLGMDPKFARPDWM
IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRXGNSQYPGAKYIVRDNGERID
LRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFITREQMMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHEIAGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPT
PGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNLPT
VKLSNKAFEKRFKFDWSNERYMRKVFNDDVIKEVTDSSEAIQELEAEWDHLVSDRDSLRQ
IFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVINGVKGLLERCVIVTGNDR
ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSAEAFEWLIGEIETRFQQAQANPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRIS
PWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENK
FQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEF
KAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAET
DPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGAAMFIGGGSTP
SMTPPMTPWVNCNTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSS
PGPSMSPYFPTSPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASASPRYA
STTPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPNSSNY
SPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASP
HYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY
SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSP
MYSPTAPSHYSPTSPAYSPSSPTFEESDD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccacaacagactcaaaggcgccgttgcgccaggtgaagcgtgtacagttcggc
attttgtcacctgatgaaattcgccgcatgtccgtcaccgagggcggcgtccagttcgcc
gagacaatggagggcggacgacccaagttgggtggccttatggatccgcgacagggtgtc
attgacagaacatcaaggtgccagacctgtgccggcaacatgaccgaatgtccgggtcat
tttggacacattgatctggccaagccggttttccacattggtttcgtcacaaaaaccatc
aagattctgcgttgcgtatgcttttattgctccaaaatgctggtttccccgcagaatccc
aaaatcaaggagatcatgctcaagtcgaagggacagcctcgcaagcgtttggcctacgtc
tacgatttgtgcaagggcaagaccatttgcgagggtggcgaggacatggacctgaccaag
gacaaccagccgccggatccaaacaagaagcccggtcacggcggttgcggtcactatcag
ccgtccattaggagaactggattggatttaacggcagaatggaaacatgccaacgaggac
tcgcaggaaaagaagattgtggtgtcagcggaacgtgtgtgggagatccttaagcacatc
accgatgaagaatgcatcctgctgggcatggatcccaaattcgctcgccccgattggatg
attgtcaccgtgttgcctgtaccgccgctagccgtccgtccggctgtcgtgatgttcggt
gcggccaagaatcaggatgatttgactcacaagctatccgatattatcaaggccaacaat
gagctgcgaaagaacgaggccagtggagcggctgcgcatgttattcaggagaacatcaaa
atgctgcaattccatgtggccaccctggtggacaacgatatgcccggcatgcccagagcc
atgcaaaagtccggcaaacccctgaaagccatcaaggctcgtctcaagggtaaggagggc
aggattcgaggaaatttgatgggcaaacgtgtcgacttctcggcgcgtactgtcatcaca
ccggatcccaatttacgtatcgatcaggtcggtgtaccgcgctccattgcccagaatctg
acgttccccgagttggtcactcccttcaatatcgatcggatgcaggagctggtgcggnag
ggtaactcacaatatccgggcgctaaatacattgtccgtgacaatggcgagcgcattgat
ttgcgtttccatcccaaatcctcggacctgcatctccagtgcggctacaaagtggaacgg
catttgcgtgacgacgatctggtcatcttcaatcgtcagcccacactccacaagatgagt
atgatggggcacagagtgaaggtgctgccgtggtctaccttccgcatgaacctctcgtgt
acatcgccctacaatgctgatttcgatggtgacgagatgaacctccatgttccccagtcg
atggagacgcgtgccgaggtggagaacatccatataacacccagacagattattacaccg
caggcgaacaaacccgtcatgggtattgtgcaggacacactgacagcggtccgtaagatg
accaaacgagatgtcttcataacccgagaacaaatgatgaatcttttgatgttcctgccc
acgtgggatggcaaaatgccgcagccatgcatcctgaagcctcgccccctgtggaccggc
aagcagatcttttcattgattatacccggcaatgtgaacatgattcgtacgcattctacg
catcccgatgaggaggacgatggtccctacaaatggatatcacccggtgacaccaaagta
atggtggaacacggtgaactgattatgggcattctctgtaagaagacgctgggaacatcg
gccggctcgctgttgcatatctgtttcctggaattgggacacgagattgccggtcgattc
tatggcaacatccagacggtgatcaataactggctactcctggaaggccatagtattggt
attggtgacacaattgccgatccgcagacatataacgagatccagatggccattaagaag
gccaaagatgatgtgataaacgttatccaaaaggcgcacaacatggaactggagccaacg
ccaggcaacacgttgcgtcagacattcgagaacaaggtgaatcgcattctgaacgatgct
cgtgacaagaccggtggctccgccaagaaatcccttaccgagtacaacaatctaaaggcc
atggtggtgtccggttcgaagggttccaacatcaacatctcacaggttatcgcttgtgtg
ggccagcagaacgttgagggcaagcgtataccatacggattccgtaagcgcaccctgccg
catttcatcaaggatgattatggtcccgagtcgcgtggctttgtggagaattcctatctg
gccggtttgacaccctccgagttctatttccacgccatgggtggtcgtgagggtctcatt
gataccgccgtcaagacagccgaaactggttacattcagcgacgtctcatcaaggctatg
gagtcggtgatggtgaactatgatggcaccgtgcgtaactctgtgggtcaactgatccag
ttgcgttatggcgaggatggtctctgcggtgagttggtggagttccagaatttgccaacc
gtcaaactatccaacaaggcattcgagaagcgtttcaaattcgactggagcaacgagcgg
tacatgcggaaggtgttcaatgacgatgtaatcaaggaggtcaccgacagcagcgaggca
atccaggaactggaggctgagtgggatcatctggtctccgatcgtgacagtttgcgacaa
atcttccctaatggcgactccaaggtggtgctgccgtgtaatctccagcgtatgatttgg
aacgtacagaagatctttcacattaacaaacgcctgcccacggatttgtcgcccatgcgg
gtgatcaatggcgtcaaaggattgctggagagatgcgtcattgtgacgggcaacgaccgc
atatcgaagcaggccaatgagaatgccacactgctgttccagtgccttatccggtccaca
ctctgcaccaagtacgtgtcggaggagttccgtctgtcagccgaggcgttcgagtggttg
attggagaaattgagacgagattccaacaggctcaagccaatcccggcgagatggtgggc
gccttggctgcccagagtttgggtgagcctgccacacagatgacactgaacactttccat
tttgctggtgtgtcctcgaagaacgtaaccctgggtgtgccgcgtctcaaggagattatc
aatatctccaagaagcccaaggccccatcactaacagttttcctcactggcggtgctgcc
cgtgatgcggagaaggccaagaatgtgctgtgccggctggagcatacaacgctgcgcaag
gtgacggccaatacagcaatttactacgatccggatccacagcgaacggtgatatccgag
gatcaggagtttgtcaatgtttactacgaaatgcctgactttgatcccacgcgcatctca
ccctggctactccgcatcgagctggatcgcaaacgaatgacggacaagaagctgaccatg
gagcagattgccgagaagatcaatgtgggtttcggtgaggatctcaactgcatctttaac
gacgacaacgctgacaagctggtgctgcgcatcaggattatgaacaatgaggagaacaag
ttccaggatgaggacgaggccgtcgacaagatggaggatgacatgttcctgcgttgcatc
gaagccaacatgctgtcggatatgacactgcagggcattgaggccattggcaaggtgtat
atgcatttgccgcaaacggacagcaagaagcgcattgttatcacagagacgggagagttt
aaggccatcggtgaatggctgcttgagacggacggcacatcgatgatgaaggtgctctcc
gaacgtgatgttgaccccattcgtacctcgtccaacgacatctgcgagatcttccaggtg
ctgggcatcgaggcggtgcgaaagtctgtcgagaaggaaatgaacgctgtcctgcagttc
tatggcctgtacgtgaactatcgtcacttggccctgttgtgcgacgtgatgaccgccaag
ggtcacttgatggccatcacacgtcacggtatcaataggcaggatactggtgctcttatg
cgttgctccttcgaggagacagtggatgtgcttatggatgccgccgctcatgctgaaacc
gatccaatgagaggtgtatccgagaacattatcatgggacagttgcccaaaatgggtacc
ggctgcttcgatctgctgctggatgctgaaaagtgccgtttcggcattgagattcccaat
acactgggcagcagtatgctgggcggtgctgccatgttcattggcggtggctcaacgccg
agcatgacgcctccaatgacgccgtgggttaactgcaacacgccgcgctacttttcgccg
ccaggccatgtgagtgccatgacaccgggtggacccagtttctcaccctcggcagcttcg
gatgcatctggtatgtcgcccagttggtcaccagcgcatccaggctcatcgcccagctca
ccgggaccctcgatgtcaccatatttccctacttcgcccagtgtgtcgccctcgtattcg
cccacaagtcccaactacacggcctcttcgccgggtggagcctcaccgaactactcacca
tccagtcccaattattcaccgacatcgccgctatatgcatctgcaagtccgcgttatgcc
tcaacgacaccgaatttcaatccccagtctacgggttattcgccatcgtcatctggatat
tcaccgacgtcaccggtttactcgcccacgtcgaatttccagtcgagtccatcgtttgcc
ggcagcggaagcaacatgtactcaccaggcaatgcctattcaccaaactcttcaaactat
tcacctaattctccatcttattcaccgacatctccatcgtactcgccctcgagtccatcg
tactcaccgacttcaccgtgctattcgcccacatcgccttcgtactcaccaacgagtccg
aattacacgccagtaacaccttcctactcgccaacgagtccaaactattcggcatctcca
cattattcaccagcctcaccagcctactcgcaaacgggagtgaagtactcgccaacatca
ccgacgtactcaccgccatcaccctcgtacgatggttcaccaggatcaccgcaatatacg
cccggatcaccgcagtactcaccggcctcacccaaatattcaccgacgtcaccgctctac
tctccgagttcgccgcaacattcaccgtcgaaccagtacagtccaactggctccacatac
tcggcgacaagtccacgctactcgcccaacatgtccatatattcacccagcagcaccaag
tactcgcccacatcgccgacgtacacgccaacggcccgtaactattcgcccacatctccg
atgtactcaccaacggcgccatcgcactacagtcccacaagtccggcgtactcgcccagt
agtccgacgttcgaggaaagtgacgattaa
DBGET
integrated database retrieval system
