Defluviicoccus vanus: HQ394_05020
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Entry
HQ394_05020 CDS
T06814
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
dvn
Defluviicoccus vanus
Pathway
dvn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dvn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HQ394_05020 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvn03021
]
HQ394_05020 (rpoB)
03400 DNA repair and recombination proteins [BR:
dvn03400
]
HQ394_05020 (rpoB)
Enzymes [BR:
dvn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HQ394_05020 (rpoB)
Transcription machinery [BR:
dvn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HQ394_05020 (rpoB)
DNA repair and recombination proteins [BR:
dvn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HQ394_05020 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb2_3
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF6241
Motif
Other DBs
NCBI-ProteinID:
QNT68833
UniProt:
A0A7H1MZE7
LinkDB
All DBs
Position
complement(1095718..1104117)
Genome browser
AA seq
2799 aa
AA seq
DB search
MATSFTGRKRIRKSFGRIAAAVQMPNLIEVQKSSYDQFLQRTTYAEQRTDTGLQEVFKSV
FPIKDFSSRGTLEFVKYEFEEPKYDVDECQQRGMTFAAPLKVTLRLVVWDVDDETGARSI
RDIKEQDVYMGDMPLMTNNGTFVINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA
RXIPYRGSWLDFEFDAKDLVYVRIDRRRKLPVSTLFMALENAATEQLRVERAAEGGRYSR
RKSSXMSPEEILDYFYEKVTFAAAAEGWKTEFRPDRLRGVKLNLDLIDADSGQILAEAGT
KLTPKLLKHLTAQGLKEQLVPDEDLAGRYVAEDLINEDTGEIYVEAGDEITEATIAALRK
AGIQEVRTLAIDHMNVGPYMRNTLAIDRNSAREEALFDIYRVMRPGEPPTLESAEALFNG
LFFDSERYDLSAVGRVKMNSRLGFDFDDSMRTLRKQDILAVVKVLVDLKDGRGEIDDIDH
LGNRRVRSVGELLENQYRVGLLRMERAIRERMSSVDIDTVMPQELINAKPAAAAVREFFG
SSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGP
NIGLINSLATFAQVNRYGFIETPYRKVTEGQVGEAVIYMSAMDEGKFTIAQANADLDDNG
YFVSDLVSCRRGSDFVLSRPSDIDYIDVSPKQLVSVATALIPFLENDDANRALMGSNMQR
QAVPLIQTEAPLVGTGMEDAVARDSGATIIAKRSGIVDQVDATRIVIRATEETSHSAPGV
DIFNLMKFQRSNQNTTIQQRPLVRVGDIVEAGDIIADGSSTELGELALGRNVLVAFMPWH
GYNFEDSILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLDEA
GIVYIGADVKPGDILVGKVTPKGETPMTPEEKLLRAIFGEKAADVRDTSLKVPPGVSGTV
LEVRVFSRRGVEKDARALAIERAEIERLAKDRDDERAILERSFHTRLRTLLLGRIIASGP
KGMPRGVAINDELLTGYTPGQWAQIAVDDDQAMQDIEALRTSFEESIARLEQRFENKVEK
VQRGDDLPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKITPNEDMPYTEDGTPVD
IVLNPLGVPSRMNVGQILETHLGWACAGLGKQVAAALDAVRRGAAIEQLQQTLKNIYGPA
VYSDIIEGLGDAQLFELGENLRKGVPVASPVFDGARESDIVAMLEKAGLSPSGQVTLSDG
RTGEPFDRVVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEMLTVKSDDVSGRTKVYESIVRGDDSFEAGIPESFNVLVKELQSLXS
QRRAQLSKARFPATAIRHGDDTMNELLRIFGQVGGTQRFDNIQISIASPDRIRSWSFGEI
KKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLQKVR
RERMGHIELASPVAHIWFLKSLPSRIGLLVDMTLRDLEKVLYFESYVVVEPGLTPLKLHE
LITEEQYQRAIDEYGEDAFTVGIGAEALRDILKTIDLEAERVTLRADLKETTSEAKRKKY
VKRLKLVEAFVESGARPEWMIMEVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNN
RLKRLIELRAPEIIIRNEKRMLQESVDALFDNSRRGRPITGASKRPLKSLSDMLKGKQGR
FRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKKMALELFKPFIYSKLELYGMATTIKAA
KRMLEKERPEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAF
NADFDGDQMAVHVPLALEAQLEARVLMMSTNNILSPASGKPIIVPSQDIVLGLYYTTLEQ
PGEPGEGMVFTDIGEIQHALESRAVTLHAKVKARYRTVDAEGNPIVELVETTPGRMLLSE
ILPRSPDVPFSLINRLLTKKEISAVIDAVYRNCGQKETVIFADRMMRLGFQRATRAGISF
GKDDLVVPEIKWQHVRVTEDRVKEYEQQYMDGLITQGEKYNKVVDAWAQCTDQVADAMMQ
AISKTQIGTQVNAVYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLS
VLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIILEEDCGTLRGLTVQPVVEG
GEVVSPLGERILGRVAADDLNDPITGEVVVPRGEIIDEEAVALVEAADLQTVKIRSVLTC
ETPIGVCAACYGRDLARGTRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAVQRGAEQS
KVEAVADGNVALRNTNFVRNSSGVPVVMNRNAELIVIDMQGRERARHRLPYGSKLLCEDR
AEIKRGDRLAEWDPYTLPIITEREGNAHYVDLVEGISMIEQVDEATGIASKVVTDWKQQP
RGGELKPRITLRDDSGDVLTLENGMEARYFLSADAILSVENGQKVHAGDLLARIPRESAK
TRDITGGLPRVAELFEARKPKDHAIISEIEGRVEFGKDYKSKRRIVVVPADGNGEPREYL
IPKGKHISVQEGDFVEAGDPLMDGNPVPHDILRVLGVEALASYLINEIQEVYRLQGVKIN
DKHIEVIVRQMLQKVEITDAGGTTFLVGEQVDRLEFDEVNAKAESMGDHPAMATPVLQGI
TKASLQTRSFISAASFQETTRVLTEAAVSGRSDSLSGLKENVIVGRLIPAGTGSAMNRLR
RLAADRDKAMGAVEDDDGEATLPPVTRSSGDSKEVSAAE
NT seq
8400 nt
NT seq
+upstream
nt +downstream
nt
atggccaccagcttcacgggtcgcaagcgcattcgcaagagttttggacgtatcgccgcg
gcggtgcagatgcccaatctgatcgaagttcagaagagctcgtacgaccaattcctgcag
cgcaccacctatgccgagcagcggaccgataccggtttgcaggaagtgttcaaatcggtc
tttccgatcaaggacttctcctcgcgtggcaccctcgagttcgtcaagtacgagttcgag
gagccgaagtacgatgtcgacgagtgccagcaacgcggcatgacctttgcggcaccgctc
aaggtcaccttgcgcctcgtcgtctgggacgtggatgacgaaaccggcgcccggtcgatc
cgcgacatcaaggagcaggacgtctacatgggcgacatgccgttgatgaccaacaacggc
accttcgtcatcaacggtaccgagcgggtgatcgtctcgcaaatgcaccgctcgcctggg
gtgttcttcgaccacgacaagggcaagacccactcctcgggcaagtatctgttcgcggcg
cggntgatcccctaccgcggctcctggctcgacttcgagttcgatgccaaggacctcgtc
tacgttcgcatcgatcgccggcgcaaactgccggtctcgacgctgttcatggcgctggag
aatgcggcgacggagcagctgcgagtagagcgtgccgctgagggggggcggtacagccgg
cggaaatcgtcgngcatgtcgccggaagaaatcctcgattacttttacgagaaggtgacc
tttgccgccgccgccgaaggctggaaaaccgagttccgcccggatcgactgcgtggcgtc
aagctcaacctcgatctcatcgacgcggacagcggccagatcctggcggaggccgggacc
aagctgacgccgaagctgctcaagcatctgacagcgcaaggactgaaggagcagcttgtt
ccggatgaggatctcgccggccgttatgtggccgaagacctgatcaacgaggacaccggc
gaaatctacgtcgaggccggtgacgagatcaccgaggcgacgattgcggcgttgcgcaag
gcgggcatccaggaggtgcggacgcttgccatcgaccacatgaatgtcggtccgtacatg
cgcaacacgctggcgatcgaccgcaattcggcccgcgaggaagcgctgttcgacatctac
cgggtgatgcgcccgggcgagccgccgaccctggaatcggcagaagcgctgttcaatggc
ctgttcttcgattccgagcgctacgacctctcggccgtcggccgggtgaagatgaactcc
cgccttggcttcgatttcgacgattcgatgcggacgctgcgcaagcaggacattctcgcc
gtggtcaaggtgctggtggatttgaaggatgggcgcggcgagatcgacgatatcgaccat
ctgggcaaccggcgggtgcgctcggtaggcgaactgttggagaaccagtaccgggtcggg
ctgctgcgcatggagcgcgccatccgcgagcggatgagctcggttgatatcgacacggtg
atgccgcaggaactgatcaacgccaagccggcggcggcggcggtgcgcgagttcttcggc
tcctcgcagctcagccagttcatggaccagaccaatccgctgtcggagatcacccacaag
cgccgcctgtcggcgctggggccgggcggcctgacgcgggaacgcgccggcttcgaggtg
cgcgacgtgcacccgacccactacggccgcatctgcccgatcgagacgccggaaggcccg
aatatcggcctgatcaactcacttgccactttcgcccaggtcaatcgctatgggttcatc
gagaccccgtatcgcaaggtgaccgaagggcaggtaggcgaggcggtgatctacatgtcg
gcgatggacgagggcaaatttaccattgcccaggccaacgccgacttggacgacaacggc
tacttcgtctccgacttggtgagctgtcggcgtggcagcgacttcgtcctgtcccgtccg
tcggacatcgactacatcgacgtgtcgccgaagcagctggtgtcggtagcgacggctttg
attcccttcctggaaaacgacgatgccaaccgggcgctgatgggctcgaacatgcagcgt
caggcggtgccgctgatccagaccgaggcgccgcttgtcggcaccggcatggaagacgcg
gtggcacgggattccggggcgacgatcatcgccaaacggtccggcatcgtcgatcaagtg
gatgcgacgcgtatcgtcatccgcgccaccgaggagacatcgcactcggcgccgggtgtc
gacatcttcaacttgatgaagtttcagcgctcgaaccagaatacgacgatccagcagcgc
ccactggtgcgtgtcggtgacatcgtcgaggcgggcgacatcatcgccgatggctcgtcg
acggaactgggcgaactggcgctgggacgcaacgtgctggtcgcgttcatgccctggcat
ggctacaacttcgaggactcgatcctgatctcggagcgcatcgtccgcgacgacgtcttc
acctcgatccatatcgaggagttcgaggtgatggcccgcgataccaagctgggtcaggag
gaaatcacccgcgatattcccaacgtcggtgaagaggcgctgaagaatctcgatgaggcc
ggcatcgtctacatcggtgccgacgtcaagccgggcgatattctcgtcggcaaggtgacg
ccgaagggcgagacgccgatgacgccggaagagaagctgctgcgggcgatcttcggcgaa
aaggccgccgacgtgcgtgatacctcactcaaggtgccgccgggggtatccggaacggtt
ctggaggtgagggtgttctctcgccgtggtgtcgagaaggacgcgcgtgcccttgccatc
gaacgggcagagatcgaacggttggccaaggaccgcgacgacgaacgcgccatcctggaa
cgcagcttccacacccggctgcggacgctgttgctcggccgcattatcgccagcgggccg
aaggggatgccgcgcggtgtcgccatcaacgacgagctgctcaccgggtataccccgggt
caatgggcgcagatcgcggtggacgacgaccaggcgatgcaggacatcgaagcgttgcgc
acctccttcgaggagtccatcgcccggctcgaacagcggttcgagaacaaggtggagaag
gtgcagcgcggcgacgacctgccgcctggcgtgatgaagatggtcaaggttttcgtcgcg
gtgaagcgcaagctgcagccaggcgacaagatggccggccggcatggcaacaagggggtg
atctcgaaaatcaccccgaatgaggacatgccctacaccgaggatggcaccccggtcgat
attgtcctcaatccgcttggcgtgccttcgcggatgaacgtcggtcagattctcgagacg
catctcggctgggcctgtgctggtctcggcaagcaggtggcggctgcactcgatgcagta
cgtcgcggtgcggcaatcgagcagctgcagcagaccttgaagaacatctacggtcccgcg
gtctacagcgacatcatcgaaggccttggcgatgcgcagttgttcgaactcggcgagaac
ctgcgcaagggtgtccccgtggcgtcgccggtgttcgatggcgcgcgtgagagcgacatc
gtcgccatgctggagaaagctggactgagtccctccgggcaggtgacgctcagcgacggg
cgaaccggcgagcctttcgatcgcgtggtgaccgtcggctacatctatatgctgaagctg
catcacctggtggacgacaagatccacgcccgctccatcggcccctacagcctcgttacc
cagcagccgctgggcggcaaggcgcagttcggtggccagcgcttcggcgaaatggaagtg
tgggcgctcgaagcttacggcgccgcttatacgttgcaggaaatgctgacggtgaagtcg
gacgacgtgtccggccgcaccaaggtctacgaatcgatcgtccgcggtgacgattccttc
gaggccggcattccggaatccttcaacgtcctcgtcaaggaattgcagtcgctgnggtct
caacgtcgagctcaactgagcaaggcacgcttcccggcaacggcaatccgacatggagac
gacacgatgaacgagttgttgcgcattttcggccaggtgggcggcacccagcggttcgac
aatatccagatctcgatcgccagccccgatcgcatccgttcctggtccttcggcgagatc
aagaagccggagacgatcaactaccggaccttcaagccggaacgcgatggcctgttctgc
gcccgcatcttcgggccgatcaaggactacgagtgcctctgcggcaagtacaagcggatg
aagtacaagggcatcatctgcgagaagtgcggcgtcgaggtgaccctgcagaaggtgcgc
cgcgaacggatggggcacatcgagctggcaagcccggtggcgcacatctggttcctcaag
tcgctgccgagccgtatcggcctgctcgtcgacatgaccctgcgcgacctggaaaaggtg
ctctatttcgagtcctacgtggtggtcgagccgggcctgacgccgctgaagctgcacgag
ttgatcaccgaggagcagtaccagcgggcgatcgacgagtacggtgaagacgcctttact
gtcggcatcggtgccgaggcactgcgcgacatcctcaagactatcgatctggaggccgag
cgggttaccttgcgtgccgacctgaaggagacgacctcggaggcgaaacgcaagaagtat
gtgaaacgtctcaagctggtggaggcgttcgtcgaatccggtgcccggccggaatggatg
atcatggaggtggtcccggtcatcccgccggaactgcgaccactggttccgcttgacggc
gggcgcttcgccacctccgacctcaacgacctctaccgccgggtgatcaaccgcaacaac
cggttgaagcggctgatcgagctgcgcgcgccggagatcatcatccgcaacgaaaagcgg
atgctgcaggagtcggtggacgcactgttcgacaacagccgccgcggccggccgatcacc
ggcgccagcaagcggccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgc
ttccgccagaacctgctcggcaagcgcgtcgattattccggccgctcggtgatcgtcgtc
gggccggagctgaagttgcacgaatgcgggctaccgaagaagatggcgctcgagctgttc
aagccgttcatctactcgaagctcgaactctacggcatggcgacgacgatcaaggcggcg
aagcggatgctcgaaaaagagcgtcccgaggtctgggacattctcgaggaggtgatccgc
gagcatccagtgctgctcaaccgagcgccgaccctgcaccggcttggtattcaagccttc
gaaccgaccttgatcgaaggcaaggcgatccaactgcatccgctggtctgcgccgccttc
aacgccgactttgacggcgaccagatggcagtgcacgtgccgctggcactcgaagcgcag
ctggaagcgcgggtgctgatgatgtcaaccaacaacatcctcagcccggcgagcggcaag
ccgatcattgtcccgtcgcaggatatcgtcctcggcctctattatacgacactggagcag
cccggcgagccgggcgaggggatggtatttaccgatattggcgagatccagcatgcgctg
gagagccgggccgtgaccttgcacgccaaggtcaaggcgcgctaccggactgtggatgcc
gaaggcaatcccatcgtcgaactggtggagacgacgcccggccggatgctgctctcggaa
atcctgccgcgtagcccggatgtgccgttttccctgatcaaccggttgctgaccaagaaa
gagatctcggcggtgatcgatgcggtctaccgcaactgtggtcagaaggagacggtgatc
tttgccgaccggatgatgcggctcggcttccagcgcgctacccgcgccggtatttccttc
ggcaaggacgatctggtggtgcctgagatcaagtggcagcacgtccgcgtcaccgaagat
cgggtgaaggaatacgagcagcaatacatggacggcctgatcacccagggcgaaaagtac
aacaaggtggtggacgcctgggcgcaatgcaccgatcaggtggcggacgccatgatgcag
gcgatttcgaagacccagatcggcacgcaggtcaacgccgtctacatgatggcgcactcc
ggtgctcgtggttcggcggcgcagatgaagcagctggccgggatgcgcgggctgatggcg
aagccgtcgggcgagatcatcgaaacgcccatcatctccaacttcaaagaaggcctctct
gtgctcgaatacttcaattcgacgcacggtgcgcgcaaggggctggccgacacggcgctg
aagacggccaactcgggctatctcacccgccgactggtggacgtggcacaggactgcatc
atccttgaagaggattgcggcaccttgcgcgggctcacggtacagccggtggtagaaggc
ggcgaagttgtctcgccgctgggcgagcgtattctcggccgcgttgcggcggatgacctc
aacgatccgatcaccggcgaggtggtcgtcccgcgcggcgagatcatcgacgaagaggcg
gtggcgctggtggaggcggccgacctgcagacggtgaaaattcgttccgttctgacctgc
gaaacgccaatcggcgtctgcgccgcgtgttacggccgcgatctggcgcgtggcacccgg
gtcaacattggcgaggcagtgggcgtcatcgccgcccagtccatcggcgagccggggacc
cagctgacgatgcgcaccttccacatcggtggtgcggtgcagcggggcgccgagcagtca
aaggtggaggcggtggccgatggcaacgtggcgctgcgcaacaccaacttcgtccgtaac
agttccggcgtcccggtggtgatgaatcgcaacgccgaactgatcgtcatcgacatgcag
ggccgcgagcgggcgcggcatcgcctaccctatggctccaaactgctgtgcgaggatcga
gccgagatcaagcgtggcgaccgcctggcggagtgggacccctatacgctgccgatcatc
accgagcgcgaaggcaacgctcactacgtcgacttggtcgagggcatctcgatgatcgaa
caggtggacgaggccacgggtatcgcgtcgaaggtggtgaccgactggaaacagcagcca
cgcggtggcgagttgaagccgcgaatcaccttgcgcgacgatagcggcgacgtgctcacc
ctcgagaacggcatggaagcgcgctacttcctctccgccgacgccatcctgtcggtggag
aacggccagaaggtacacgccggtgaccttctcgcccgtatcccgcgcgaatcggcgaaa
acgcgtgacattaccggcggtctaccgcgggtggcggagctgttcgaggcgcgcaagccg
aaggatcacgccatcatcagcgagatcgaagggcgggtggagttcggcaaggactataaa
tctaagcggcgcatcgtcgtcgttccggccgatggcaacggcgagccgcgggaatatctg
atcccgaagggcaagcatatcagcgtccaggaaggtgacttcgtcgaagccggcgatccg
ctgatggacggcaacccggtgccgcatgacatcctgcgcgtgctcggggtcgaggcgctt
gccagctacctgatcaacgagattcaggaggtctatcggctgcagggcgtgaagatcaac
gacaagcacattgaggtgatcgtccggcagatgctgcagaaggtggagatcactgatgcc
ggtggcaccaccttcctcgtcggggagcaggttgaccgccttgagttcgacgaggtcaac
gccaaggctgaatccatgggtgaccatccggccatggcgacgccggtgctgcaggggatc
accaaggccagcctgcagactcgttccttcatctccgccgcctccttccaggagacgacc
cgggtgttgaccgaagcggcggtctccgggcgtagcgatagtttgtcggggctgaaggag
aacgtcatcgtcggtcggctgatcccggccggcaccggcagcgcgatgaaccggctgcgg
cggctggctgccgaccgcgacaaggcgatgggagcggtagaagacgacgacggcgaggca
acgctgccgccggtgacacggtcgtcaggcgatagcaaagaggtctcggctgccgaataa
DBGET
integrated database retrieval system
