Dyadobacter chenhuakuii: NFI80_19560
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Entry
NFI80_19560 CDS
T08460
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
dyc
Dyadobacter chenhuakuii
Brite
KEGG Orthology (KO) [BR:
dyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dyc03009
]
NFI80_19560 (rimO)
Enzymes [BR:
dyc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
NFI80_19560 (rimO)
Ribosome biogenesis [BR:
dyc03009
]
Prokaryotic type
ribosomal protein modification factors
NFI80_19560 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
USJ30056
LinkDB
All DBs
Position
complement(4703314..4704624)
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AA seq
436 aa
AA seq
DB search
MKTKGIVKNKVNIITLGCSKNLVDSEVLYTQLKGNGFAVDHESKKDDSQIVVINTCGFID
NAKEESINTILRYADAKAAGMVDKVYVTGCLSHRYKDELSVEIPTVDAWFGTNELPRLLK
TLKADYKHELVGERLLTTPTHYAYLKIAEGCDRPCSFCAIPIMRGGHVSRSIEELVKEAK
SLAKRGTKELILIAQDLTYYGLDIYKKRNLSDLLAQLSDVEGIEWIRLQYAYPAGFPMDI
LDIMNERSNICKYLDMPLQTGSTEILKSMRRGITREKTEALIETIRTKVPDITLRTTLIV
GHPGETEALFDETYDFVEKMRFDRLGAFQYSHEDNTHSYTLPDDIPAEIKQERADAIMEL
QQGISYELNQKKIGNTYKVLFDRKEGGHFIGRTEFDSPEVDNEVLVPASQYVRLGDFANV
NITSAEEFDLYGTVIS
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccaaaggaatagttaagaataaagtcaatattataacgctgggttgttctaaa
aacctggtggattcagaggtgctttatacgcagctcaaaggaaacggattcgccgttgat
catgagtcgaaaaaggatgattcccagattgttgtgattaacacctgtggatttatcgat
aatgctaaggaggaatccatcaacacaatcctgcgctatgccgatgcaaaagctgctgga
atggtggataaagtttatgttacgggctgtttatcacacagatacaaagatgagctttct
gtggaaatcccaacagtagacgcctggttcgggaccaatgagctgccacgtttgctcaaa
acgctgaaagctgattacaagcatgaactggtcggtgagcgtttgctaaccacgcctaca
cattacgcctacctgaaaatcgccgagggttgcgatcgcccttgcagcttctgtgcaatt
cccattatgcgtggcggtcacgtttcccgctcaattgaagagcttgttaaggaagcaaaa
tcactggctaaacgtggcacgaaagaactgatcctcattgcccaggacctgacttactac
ggtcttgatatttataaaaaaagaaacctttccgacctgctggctcaactttccgatgtg
gaaggcattgagtggatcaggttgcaatatgcttatccggccggatttccgatggacatt
ctggatatcatgaatgagcgcagcaacatttgtaaatatcttgatatgccgctccaaaca
ggctcgacagagattttgaaatccatgcgtcgcgggataaccagagaaaaaacggaagcg
ttgatcgaaacgatccgtaccaaagtgcctgacatcacattaaggaccacattgatcgta
ggccatccgggggaaacagaagcgctatttgacgaaacctacgattttgttgaaaaaatg
cgtttcgaccgtttgggagcatttcaatattcccacgaagacaatacacattcctacacg
ctgcccgacgacattcctgccgaaatcaaacaggaacgtgcggatgccattatggagctg
caacaaggcatttcgtacgaactgaaccagaaaaaaatcggcaatacttacaaagtgctt
ttcgatcgcaaagaaggcgggcattttattggccgcacggaattcgactcgcctgaggtt
gataatgaagtacttgtgccagccagtcagtatgttcggttaggggattttgccaatgtt
aacattacatccgcggaggaatttgatctttacgggacggttatttcctga
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