Erigeron canadensis (horseweed): 122584901
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Entry
122584901 CDS
T07610
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122584901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122584901
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122584901
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
122584901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
122584901
NCBI-ProteinID:
XP_043612911
LinkDB
All DBs
Position
1:complement(22907376..22930298)
Genome browser
AA seq
1409 aa
AA seq
DB search
MNRNYRGAPDQDTTLKLSFTKQPYIEDVRPRRIKSVNFSMLSGEDILKMGEVQVNRSICY
VSEDESPLPNGLLDPRMGPPHKHGTCETCHGSIETCPGHFGYLALALPVFNVGYLSHIVD
ILKCICKFCSRILLVEDERLDYLKRMRNQKDHLRKNDIFKKVVKRCTAMASSKKAVTCSR
CGYINGIVKRAVGTVGVIHDRSKVQDDTSKKFNDAISNMKETKKPVIVSSMLDPDKVLKL
FKKMLDMDCDLLYLADRPEKLIISTVPVPPLPIRPSTKVAGATISNENDVTVGLEDIIED
NASVRQFLTDSTSANKGQDPWEILQLTVAKYINSDVRVPISYIKLKQQQKQRKKLISGLV
QRIKGKQGRFRGNLSGKRVQYTGRTVISPDPNLNITEVAIPILMAQIVTYPERVSHHNIE
RLRHAVCNGTLKYPGAKHIRRPDGTIMSLSIKARKRLADELKFGDIVDRHLIDGDVVLFN
RQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALMLM
GVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGMDLIDLPTP
AIVKPIELWTGKQLFSVLLRPHADMKVYLNLTVTEKSYTKSSGKRDKSYETMCPNDGYIH
IHNSELLSGQLGKATLGNGNKDGLYSVLLRDYNSHAAAACMNRLAKLSARWIGNHGFSIG
IDDVQPGDNLNDYTHRIISEGNKKCDNFILNFNKGKLKLQPGCNAAQTLEAEITGVLNKI
RDETGKVCMEKLKWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGQRAPNGFIDRSLP
HFPRKSKTPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYLSRKLMKGL
EDLSVYYDNTVRDASACIVQFTYGGDGMDPSQMEGKAGFPLNFDRLLMKAKATCPAGQHK
GMSSSEIREVVEERLSMHDMTPEGGCSEDFRKKLKQFLEKYAMTLEVTTRALQMHGGQTN
GEESGIIESVAQSISGITCQQLQVFLNTCISRYHQKRIDAGTNVGSIGAHSIGEPGTQMT
LKTFHFAGVASMNVTLGVPRIREILNAAKKISTPVITAKLKSNDNISFVKLVKSQMERTL
LGQVAKSIKLVMGLRAASIVISLDKKTIEALQLSIDAYTVKESILKTPKIKLKEANIIVL
DARKLQIKPLYDRDKLYFDLHWLRNRLSTVVVKGIGTTERAVINKKKEQDKFNLLVEGTG
LQSVMGVEGINGHETTSNHILEVQSTLGIEAARRSIIKEIQYTMESHGMSIDIRHMMLLA
DLMTYKGEVLGITAFGIQKMKESVLKLASFERASDHLFNASVNGRVDEIQGVSECIIMGI
PMQTGTGIIGIQQRVPSFKLERLSDGILS
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaacagaaattaccgaggagcaccagaccaggacacaactttaaaactttcatttact
aaacagccttatatcgaagatgtccgtccccgaagaattaagagtgttaatttttcgatg
ttatctggcgaggatatacttaaaatgggagaagttcaagtgaatcgttcaatttgttac
gtgagtgaagatgaaagtcctcttcctaatggcttgttggatccacgcatgggtcctcca
cacaagcatggcacatgtgagacttgtcatgggtctattgaaacttgccctggtcatttt
ggttacttagcacttgcattgccggtttttaatgttggatatttatctcacattgtggac
attttgaagtgcatatgcaagttttgttcccgtatattattggtggaggatgaacgtctc
gactacttaaagaggatgagaaatcaaaaagatcatctgaggaagaatgacatctttaaa
aaggttgttaaaaggtgcacagctatggcaagtagtaagaaggccgtgacatgctccaga
tgtggttatatcaatggtatagttaaaagagctgttggaacagtgggagtcatacatgat
cgtagcaaagttcaagatgatacttcaaagaagttcaatgatgctatttctaacatgaag
gagaccaaaaaacctgttattgtgtcttctatgttagaccccgacaaagttcttaaactt
ttcaagaagatgctggatatggattgtgatctgctttatcttgctgatagacccgagaaa
ctcattatatcaaccgtacctgttcctccgctacctatccgtccttctaccaaagttgcc
ggagcgacaataagcaacgagaatgatgttaccgtgggattggaagatattatagaggat
aatgcttctgttcgccagtttttaacagattcaacttctgctaacaaaggccaggatccc
tgggaaattctgcagcttacggttgcaaaatatataaacagtgatgttcgtgtaccaatt
tcatatattaaactgaagcagcaacagaagcagcgaaagaaactaattagtggtcttgtt
caacgcatcaaagggaaacaaggacgttttcgagggaatctgtctgggaagcgtgttcag
tatactggcaggacagttatctctcctgaccctaatctaaatattacagaggttgcgatt
cctatcctaatggcacagattgtgacttaccctgagcgtgtttcacatcacaatatagag
agattgagacatgctgtgtgtaatggaactttaaaataccctggtgcaaagcatatcaga
aggccagatggtaccataatgtcattgagtatcaaagccagaaagcgtttggctgatgaa
ttgaaatttggtgacatagttgatcgccatttaatagatggcgatgttgtcctcttcaat
aggcaacccagtttgcatcgcatgtcgatcatgagtcacagggcaaggattatgccgtgg
cgcactttgagattcaatgaatctgtttgtaatccctacaatgccgattttgatggtgat
gagatgaatattcatgttccccaaacagaagaagctagaacagaagctcttatgctaatg
ggggtgcaaaacaatttatgcacgccaaagaatggggagattttagttgcatccacacaa
gattttttgacgtcttccttcctcataacaaggaaggacacattctacgaccgtgcttca
ttttcccttatgtgttcttatatgggtgatgggatggatcttatcgatttaccgactcct
gctatagtcaagccaatagagctttggacaggtaaacagttgtttagtgtactgttgcgc
ccacatgcagatatgaaagtttatctgaatctcactgttactgaaaaaagttacacaaag
tcaagtggaaaaagggacaagtcttacgagacaatgtgcccaaatgatggttatatccac
atccacaatagtgaacttcttagtggacaacttgggaaggctactttagggaatggcaac
aaggatggactctactcggtgcttctcagggattacaattcacacgctgctgctgcttgt
atgaaccgcttggcaaaattaagtgctcgctggataggaaatcatggattctcaattgga
attgatgatgtccaacctggggataatttgaatgactacactcatagaatcatttctgaa
gggaacaaaaaatgtgataatttcattctcaatttcaataaaggaaagctcaagttgcag
cctggttgtaatgctgcccagacacttgaagctgagatcaccggtgtcttgaataagatc
agagatgaaactggaaaggtttgcatggagaaactaaaatggaggaacagccccttaatt
atgtctcagtgtggatcaaaaggatctcctatcaatatcagtcagatgattgcatgtgtt
ggtcagcaatcagttggaggccaacgtgctccaaatggatttattgatcgaagtcttccc
cattttcccaggaagtcaaagacccctgctgcaaaggggtttgtagcaaattctttctat
agtggtttaactgctactgagtttttcttccacacgatgggagggcgagaagggcttgtg
gatacagctgttaagacggctgacacgggttatctatcccgaaaactaatgaagggatta
gaagacttgtctgtttactatgataacacagtaagggatgcgagtgcatgtattgtacag
ttcacatatggtggtgatggaatggacccgtctcaaatggaaggaaaggcaggatttcct
ctaaattttgacaggttattgatgaaggccaaggctacatgtcctgctggacaacataaa
ggcatgtcttcctcagagatccgtgaagtggttgaggagcgtctttcaatgcatgatatg
actccagaagggggctgctctgaggactttaggaagaaactaaaacaatttcttgaaaag
tatgccatgacactagaagtcacaacgagagcacttcaaatgcatggtggacaaactaat
ggcgaagaatctggaattatagaaagtgtagctcaaagcatatctggcattacttgtcag
cagctgcaggtgttcttaaatacttgcatctctcgttaccatcaaaagaggattgatgct
ggaacaaacgtcggttcaataggtgctcatagtattggagaacccggaacacagatgaca
ttgaaaacctttcattttgctggtgttgcgagcatgaatgtcactcttggggttccccgt
atcagggaaattttaaatgcagccaagaaaatcagcacaccagtcattaccgcaaagctc
aaatctaatgataacatatcatttgtcaagttggtaaaaagccaaatggaaagaactctt
ctgggccaggttgcaaagagtataaagttagtgatgggattgcgagccgcttctattgtt
attagtcttgacaagaaaacaatagaagccctacaactctctatagatgcatataccgta
aaagaatcaatactaaagactcctaaaatcaaactaaaggaagctaatatcattgttttg
gatgctagaaaacttcaaattaagcctttatatgacagagacaaactttattttgatctc
cattggctcagaaatagactttcgacagtcgttgtgaagggcataggtactactgaacga
gctgtaataaacaaaaagaaggagcaggacaagtttaacttgctcgttgaaggaacgggt
cttcaatcagtcatgggcgtggaaggaattaatggacatgaaaccactagtaatcatatt
cttgaagtacagagcacacttggcattgaagctgcaagaaggtccattattaaagagatt
caatataccatggaaagtcatggaatgagtatagatattcgacatatgatgcttttagcc
gatctcatgacatataagggggaagttttggggatcaccgcatttggtattcagaaaatg
aaagaaagtgtgctgaagttggcttcgtttgagagggcatcagatcatctttttaatgct
tctgtaaatgggcgagtggacgagatacaaggcgttagtgaatgtattatcatgggcata
ccaatgcagacaggaacgggaataattggaattcaacaaagggttccttcatttaagttg
gagaggttatcagacggcattttatcttaa
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