Erigeron canadensis (horseweed): 122585980
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Entry
122585980 CDS
T07610
Name
(RefSeq) nuclear-pore anchor
KO
K09291
nucleoprotein TPR
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122585980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122585980
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122585980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
122585980
NCBI-ProteinID:
XP_043614030
LinkDB
All DBs
Position
1:complement(40391257..40400365)
Genome browser
AA seq
1974 aa
AA seq
DB search
MPLFISDEEYTRISHDPSLISQKADAFISQLYNQIETEKAQFDASSITAEQTCSLLEQKY
VSLKSEFVALQSQHSQVNSDLEKRGSELAQLQAEKHQIYLQSIGKDGEIERLSLEASDLR
KSKSQLLQLIEHKNLEINEKNSSIKGYLDKIVSLTDNASSKESRISELESDHARVHTSLA
RLSQEKELVERHNLWLNDELTAKVNSLLQLRKVHNELEADMSSKLADLERKYNETSSSLK
WKDDRVKELESKLEALQNELCSSKDTAAANEERLSAELSTVNKLAELYKENSDELSKKSG
ELEGVIKALESHASQVEKDFKERLDKETASRIEFEKEVSVLKAKLEKCEVDLENSRKSDQ
IGLLQLSSFNMKTYGNSNMDSEADNNLMLVPSIPAGISGTALAASLLRDGWSLVKMYEKY
QEAVDALRHEQLGRKQSELILERVYHEIEERADVLMDERAEHERMVEAYDAINEKLQNSL
SEQNALERTIQELKAELKRHERDYNLAQKENTDLQKQVTVLLKECRDIQLRCGSDGYGSA
MEQLNATSDANSDFSEKLLTFRDINGLVEQNVQLRGLVRLLTEQIESKETELKQNFEEEF
RKHSNETACKVDAVLARAEEQAQMIESLHTTVAMYKKLYEEEHKRHLTLSQSPDAAPLEK
MNNVPLLLEGSQDASKRALEKAYERIKLLEDEMAGLRSEIITLRSQNNKLTLEATFAHEK
LERFMKDFDHQREETNGIISRNVEFSQLIVDYQKKIREASENLHIAEDLSRKLNMEVSVL
KREKEILINSEKRAFEEVRSMSDRVQQLQATLNTIQSAEEVREESRSAHRMSQEDYVKRT
EQEWAEAKKELQIERDNVRKLTLEHESAMRGSMQRIEEMGKELANALHAVSEANARASVA
EERLSHYEKTKSSELDKNASTSNTDDMAQLKEENEKLRVEAQSCKDHMLQYRSLANVNEA
ALKQMEDSHENFKAEAEKVKKSLEDEVASLKEHVSQLQDGYNLKAKEVASAAESQEEALA
SSLLEISKLREECSEKLLRIEGLESQMSAMKNNLENEHLRWRTAQENYERQVILQSETIQ
ELTKTSQELAKVQEKASELERISDILKIENSELKSKWETEKLALEEAKERSEKKYNEINE
QNKLLLDQLEALHIKMAETSHGSGSGVQSSDDGGMQNVVKYLRRSKEIAETEISLLKQEK
LRLQSQLEGALKAESVAQGLLRAERESSRKVHFTEEEFKALQVQVREMNLLRESNVQLRE
ENKHNFDECQKLRQFTHNARSEVERLEGLLGEKQKEVEACKREIEIQKKDRKDLETKLGE
LLNKFKDIDPEDYGRMRADALEMNKKLFDKEGQLEEMKKLVSEKLVVIQRFEQDLSRSKV
EMAEKESRINNLLQTETSLKLEMDKHKRFTAQFKRRSDNLSKEKEELSRKNLELSKELAD
SSKIKRSNVESAGEQAEKDAKLQILERTVEKQRDELREMEAKDTRIQMLEKTLERLKEDN
KKLGKANSQKNDELEKRKQALKTVSDGVENIKRTPESEAVPPHSGDTFDNLAATADIPPV
STTGEVATTSTVTSVVPASQNIDESTKPPVAAKPKVEPRKMARRLVRPRIVKPEQPKADV
DMFELQSSARKRPSASEGKYGSQLQESTMSDVAAPLTKRSRGSEQQESTEGQNVTVTSHA
SETVSFPTDENIAEEQTIKEDEEVETGDEQLVEDQAELQNDRSDIAEENVSRPTENEVTE
DPPKITNVEHGQFEPETDEAGSEPEEGEMVSDAAIGHEGGGQETGEAQLVEHQIRSPSPM
PIEDEMTEDTLGDMEIGSPSLTEDNEDKNEEGEIEAEETTPESSTDKVNNDRNDEAGSMA
EEATTTAVTIPAVSEAPSKTSALVETSASKQDSSTLSSVSTSGSTEVKPEEPVADTVPRT
INLNERARQRSWQRLGVAQPSPPVTRGRGRVIQRGRARGGRTGRGGQTPGSQGM
NT seq
5925 nt
NT seq
+upstream
nt +downstream
nt
atgccgttattcatttccgacgaagaatacactcgaatctcacacgatccatctctaatt
tctcaaaaagccgacgcctttatttcacaactttacaatcaaatcgaaaccgaaaaagct
caattcgacgcctcttcgataaccgccgaacaaacgtgctcgcttctcgaacaaaaatat
gtctctctgaaatccgaatttgttgctcttcaatcgcaacactcgcaggtcaattctgat
ttggaaaaacgtggttccgaacttgcgcagcttcaagccgaaaagcatcagatttatctt
caatcgattggcaaagatggtgagattgaacggctgtcattggaagcttcagatcttcga
aaatccaaaagtcaattgctgcagctgattgaacataagaatctagagattaatgagaag
aattctagcatcaagggatatcttgacaagattgtttctttgaccgacaatgcttcatct
aaagaatcacgtatcagtgaactggagtctgaccatgctcgggttcacacttctttggct
cgtttgtctcaggagaaagaattagttgagagacataatctttggcttaacgatgagttg
accgctaaagtcaacagtttattgcagctcagaaaggtacataatgaactagaggctgat
atgtcttctaagcttgcagatcttgaaagaaaatacaatgaaacttctagctctttgaag
tggaaggatgatagagtgaaggagctcgagtcaaagcttgaagctttacagaatgagcta
tgttcatctaaagatacggctgctgcaaatgaggagcgattgtctgccgagctttctact
gtaaataaacttgctgaactctacaaagagaattcagatgaattgtccaaaaagtctgga
gagctcgagggtgttatcaaggctttggagtcgcatgcaagtcaggttgaaaaagatttc
aaagaacggcttgataaagaaacagccagtagaatagaatttgagaaagaagtttcggtt
ttaaaagcaaaacttgagaagtgtgaagtggatttggaaaattctagaaaatcagaccag
attggtcttctgcaactgagcagtttcaatatgaaaacatatggaaactctaacatggac
agtgaggctgacaacaatctaatgcttgttcccagtattccggcaggtatatcgggcacg
gcgttagctgcttcccttctgcgtgatggttggagtttagttaaaatgtatgaaaaatac
caagaagctgttgatgctttgagacatgaacaattgggaagaaaacagtctgaattgata
cttgaaagggtttatcatgaaatagaagagagagctgatgtcctaatggatgaacgagca
gaacatgaaagaatggttgaagcttatgatgcaataaatgaaaagctgcagaattctctt
tctgagcaaaatgcccttgagagaactattcaggagctgaaggctgaattgaaaaggcat
gaaagggactacaatttagctcaaaaggagaacactgatcttcaaaagcaagtgacggtt
ttgttgaaggaatgtcgtgacatacaacttcgttgcggatctgatggttacggttctgcc
atggagcagctgaatgccacttcagatgctaacagcgatttctctgaaaagctgttaact
ttcagagatataaatgggttagttgagcagaatgtacagcttcgtggtctagttcgtctt
ttaaccgagcagattgagagtaaagaaacagagttaaagcagaattttgaggaagagttc
cgtaaacattctaatgaaaccgcttgtaaagttgatgcagttttggcgagagcagaagaa
caagctcaaatgattgaatcgcttcatacaactgttgcgatgtacaagaaattatacgag
gaagagcataaacgtcatcttacactttcacaatctccagatgcagcaccgttggaaaaa
atgaataatgttccacttctacttgaaggttctcaagatgcttcaaaaagggcactcgag
aaagcctatgagcgcataaagcttctagaagatgagatggcggggttaagaagtgagatc
atcacattaaggtcacagaataacaagttgacgctagaagcaacttttgcacatgagaaa
cttgagcggtttatgaaagattttgatcatcaacgagaagaaacaaatggaattatatca
agaaatgttgagttctcacagttgatagttgattatcaaaagaagatccgtgaagcttct
gaaaatttacatattgctgaggacttgtcacggaagctaaacatggaggtatctgtttta
aagcgtgaaaaagaaatattaattaattctgaaaaacgagcatttgaggaggttcgtagt
atgtcagatagagttcagcagttgcaggctacattgaacacaattcagagtgctgaagaa
gttcgagaagaatctagaagtgctcatcgcatgagtcaagaggattatgtaaaacgtacc
gagcaagaatgggctgaggctaaaaaagaactccagatagaacgggataatgttcgaaag
ctcacgcttgagcatgaatcagctatgcgggggtccatgcaacgtatagaggagatggga
aaagaattagctaatgctttacatgctgtttctgaagctaatgctagagcttctgttgct
gaagaacgattatctcactatgagaaaacgaagagttctgagctagataaaaatgcgtct
acttcaaatacagatgacatggctcagttgaaggaagagaatgagaaattgagagtagaa
gcccaatcttgtaaagatcatatgttgcaatataggagccttgcaaatgtgaatgaggct
gccttaaaacagatggaagattctcatgaaaattttaaagctgaggcagagaaggtgaag
aaatcattagaagatgaagttgcatcactcaaagagcatgtaagtcagcttcaagatggt
tataatctgaaggcaaaagaagtagcttctgctgctgaatcacaagaagaagctcttgct
tcctcattgttagagatttctaagttaagggaagaatgtagtgaaaaactgttgcgtatt
gagggtttggagtcgcaaatgtcagcaatgaaaaataatttggaaaatgagcatttaaga
tggcgtacggcacaagagaattatgaaaggcaggttatactccagtctgagacaattcaa
gagttgaccaaaacatcacaagaattggctaaagtacaagagaaagcatccgagctcgag
aggatatctgacatcctcaaaattgagaacagtgagctaaaaagcaagtgggagactgaa
aagctggcgttggaagaggcaaaagaaagatcagagaagaagtataacgaaattaatgaa
caaaacaagttgttgcttgatcagcttgaggcactgcacattaaaatggcagaaacgagt
catggttctggctctggtgtgcaatcttctgatgatggtgggatgcagaatgtggtgaag
tatttgaggcggtctaaagagattgcagagactgagatttctttactgaaacaggaaaag
ctacggctacagtctcagcttgaaggtgccttgaaggctgaatcagttgctcaggggtta
ctccgtgccgagagagaaagttcccgaaaggtgcattttacagaagaagaatttaaagcg
ctgcaggttcaagtcagagagatgaatttgcttcgagagagcaatgtacagcttagggag
gaaaacaaacacaattttgatgaatgtcaaaagctacgccagtttacacataatgcaaga
agtgaagttgaaaggttagagggtttgcttggtgaaaagcaaaaagaggtggaagcttgt
aagagagagatagagatacaaaagaaagacaggaaagatctagaaacaaaattgggtgaa
ctgctcaataaatttaaagatatagatcccgaagattacggtcgtatgcgagctgatgcc
cttgagatgaacaaaaagttgtttgataaggaaggacagttggaggagatgaagaaactt
gtttctgaaaaactagttgtaatccaacggtttgaacaggatctttcaagaagcaaggtg
gaaatggctgaaaaagagtcaagaattaacaatcttttacaaaccgagacctcccttaaa
ttggaaatggacaagcacaaaaggtttactgcccagtttaaaagacgtagtgataacctg
tctaaggagaaagaggaactttcaaggaagaatttggaactttccaaagagttggccgat
tctagcaagataaaacggagcaatgtggagagtgcaggcgaacaggctgagaaagatgca
aagctacagatactcgagagaactgttgagaaacaaagggatgagttacgggagatggaa
gcgaaagatacgaggatacagatgctagaaaaaactttggaaagattaaaagaggataat
aaaaaacttgggaaagcaaatagtcaaaagaatgatgaattggagaaacgtaagcaggca
ctgaaaactgtttcagatggagttgaaaacatcaagcgtacccctgaatcggaagcggta
ccacctcattcaggtgatacctttgacaatcttgctgctaccgctgatatacctccagtt
tccaccacaggcgaggtggctactacaagtactgtgacatcagtagtacctgcatctcag
aacatagatgagagtactaagccaccggttgcagccaaaccaaaagttgaaccacgtaaa
atggcaaggaggttagtccgtccccgtattgtaaaacccgagcaacctaaggctgatgtt
gatatgttcgagttacagtcatctgcacgcaaacgtccttctgcttcggagggaaaatat
ggatcacagttgcaggagagcactatgtctgatgtggcagcacctctcaccaagagatca
aggggttcagagcagcaagagagtacagaaggtcaaaatgtcacagtgacttcacatgct
tctgaaacagtttcttttcccactgatgaaaatattgcagaggaacaaactattaaggag
gatgaggaagttgagactggtgatgaacagctggttgaggaccaagcagagttacagaac
gatagaagtgatattgctgaagaaaatgtaagcaggccaactgaaaacgaggttactgaa
gatccaccaaagattactaatgtggagcacggacaattcgaaccagaaacagatgaagct
ggaagtgagcctgaagagggagaaatggtttcagatgctgctattggtcatgaaggtggt
ggccaagaaacgggggaagctcaattagttgagcatcaaattaggtcaccttcgcccatg
ccaattgaagatgaaatgactgaagacaccctaggggatatggagatcggctccccatct
ttaacagaagacaatgaagacaagaacgaagaaggtgaaatagaagcggaagaaacaact
ccagagagttcaactgataaggtgaataatgacaggaatgatgaagcagggtccatggct
gaagaggctaccaccactgctgttacaatccctgcagtatccgaggcaccatcaaaaact
tccgctttggttgaaacaagtgcatcaaaacaagatagtagcacgctaagcagtgtatca
acatcagggtcgacagaagtaaagccagaagagccagttgcggatacagtcccaagaact
attaatttgaatgagagagcaaggcaaaggtcttggcaaaggttgggtgtagcacaacct
tcacctcctgttaccaggggtcgtggaagggtgattcagcggggacgagctcgtggagga
cgcactggccgtggtggacaaacccccggctctcaaggtatgtga
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integrated database retrieval system