Erigeron canadensis (horseweed): 122595356
Help
Entry
122595356 CDS
T07610
Name
(RefSeq) polygalacturonase At1g48100
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad00040
Pentose and glucuronate interconversions
ecad01100
Metabolic pathways
Module
ecad_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122595356
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
122595356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
3H
EAD10
Motif
Other DBs
NCBI-GeneID:
122595356
NCBI-ProteinID:
XP_043623640
LinkDB
All DBs
Position
4:complement(2121120..2124184)
Genome browser
AA seq
441 aa
AA seq
DB search
MKHLSLFLCQILVFSSLLTIIPSIEGRKFHRGCKKHHKGYEDSCTSISIFNILSFGAKAN
GVSDDSKKLVATWKAACKVPGGVVQIPSGHKFLLKPVTLQGPCMGHVTLQVDGTLLAQPK
IGSWSKSNLFQWINFKWVHNFTIQGSGTIDGQGYNWWKPMKSKYISDIKPTALRFYASED
VTVRDITIRNSPQVHLKFDNSRGVKVDNITISSPGNSPNTDGIHLQNTRDVEILHSNIGS
GDDCVSIQTGCSNVHIHHINCGPGHGISLGGLGKDKSIACVSDILVENSNIQNTLYGARI
KTWQGGIGLVKNVTFSNIQVANVNFPIVINQFYCDKSLCQNQTGSVAIKEVNFERITGTF
STQPIHLACSDDVPCTGINLSDIQLKPSRGPLEGSQNQEALCSNSYGNSKGPLIPSSMNY
CLKKGGGVSVHKFSRSSNELC
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatttaagtctatttctttgtcaaattcttgtgttctcttcccttcttacaata
ataccatccatcgaaggaagaaaattccatagaggttgcaagaaacatcataagggttat
gaagattcttgtacatccatatccattttcaatattttgtcttttggagcaaaagctaat
ggagtttctgatgactctaagaaacttgtagctacatggaaagccgcatgtaaagttcct
ggaggagttgtacaaattccgtcgggtcacaagtttttgctaaaacccgtaacacttcaa
ggcccgtgcatgggtcatgttactcttcaggtagacggaactctgttagcgcagccaaag
atcggatcatggtcaaaatcaaacttattccaatggatcaatttcaaatgggttcacaat
tttacgatacaaggaagtggtaccattgacggccaaggctacaattggtggaaaccaatg
aaatccaagtacatttcagacataaaaccaactgctttgagattttatgcaagcgaagat
gttaccgttcgtgatatcacgattagaaatagcccacaagttcatttgaaatttgacaac
tctagaggtgtcaaagttgataacattaccatttcatcacctggaaatagccctaacacc
gacggtattcacctccaaaacactcgtgatgtggaaatcctgcattccaatatcggatct
ggagatgattgtgtctccatacaaactggatgctccaatgttcacattcaccatataaac
tgtggtcctggacatggtataagtttaggaggattgggaaaagataaaagtattgcttgt
gtatcggatattcttgtagagaattcaaacattcaaaacactttgtatggagcaaggatt
aaaacttggcagggaggaataggtttggtcaagaatgttactttttcaaacattcaggtg
gcaaatgttaattttccaatagtgatcaaccaattctattgcgacaagagtctttgtcaa
aaccaaacgggctcagttgcgataaaggaagtaaactttgagagaataaccgggacgttc
tcaactcaacccatacatttagcatgtagcgatgatgtgccgtgtaccgggattaatcta
tctgacattcaactaaaaccttcgagaggccctctcgaaggatctcaaaatcaagaagct
ttgtgctcaaactcttatggcaattcaaagggtccattgataccatctagcatgaactat
tgcttaaaaaaaggtggtggtgtctcggttcacaaattttcaagatcttctaatgagcta
tgttag
DBGET
integrated database retrieval system
