KEGG   Erigeron canadensis (horseweed): 122600295
Entry
122600295         CDS       T07610                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 12
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03020  RNA polymerase
ecad03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122600295
  09124 Replication and repair
   03420 Nucleotide excision repair
    122600295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecad03021]
    122600295
   03400 DNA repair and recombination proteins [BR:ecad03400]
    122600295
Transcription machinery [BR:ecad03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     122600295
  RNA polymerase III system
   RNA polymerase III
     122600295
  RNA polymerase I system
   RNA polymerase I
     122600295
DNA repair and recombination proteins [BR:ecad03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122600295
SSDB
Motif
Pfam: DNA_RNApol_7kD YjdM_Zn_Ribbon zinc_ribbon_13 DUF5816 HypA OrfB_Zn_ribbon DUF1451 zinc_ribbon_10 zf-ribbon_3 Zn-ribbon_8
Other DBs
NCBI-GeneID: 122600295
NCBI-ProteinID: XP_043628936
LinkDB
Position
5:complement(30009606..30011839)
AA seq 56 aa
MDQQNPQALPEPVTYICGDCGQENTLKVGDVIQCRECGYRILYKKRTKKVVQYEAR
NT seq 171 nt   +upstreamnt  +downstreamnt
atggatcaacaaaacccacaagcactcccggaaccagttacctatatttgcggagattgt
ggacaggagaatacgttgaaggttggtgacgtcattcagtgccgagaatgtggttaccgt
attctttacaaaaagcgtaccaaaaaagttgttcagtatgaagctcgttga

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