Erigeron canadensis (horseweed): 122606738
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Entry
122606738 CDS
T07610
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122606738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122606738
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122606738
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
122606738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
122606738
NCBI-ProteinID:
XP_043635531
LinkDB
All DBs
Position
7:complement(27446838..27457828)
Genome browser
AA seq
1665 aa
AA seq
DB search
MTQTTEGASEIVEGVRFSFMTDEEVRKHSILKVTNPILLDSVGRPMPGGLYDPLLGPMDE
RAPCKSCGQKSYECPGHCGHIDLVSPVYNPLLFDMLFNLLRRTCFFCHHFRAGEKEVNNC
TTKLMMIAQGDVVGAKDYVPKSDSDDDEKEEGSQVPSSNLLIGSQSDRPEETKQKVWTSV
QYIEARAVLKEFMSDTGKTCRHCDTKNPKITKPTFGSFRMDMSQADIEKNIINGYQLGSN
RDEEELLDAGEDDKTSEVINVNEQSEDDRIDTAGTNSSSSKSSKRKKLKKKKSNVAHDYD
QLKQNYTGSLLPSRVISIIKDLWENEAGLCSYICDMQQEQFPGSFKSTSYSMFFIEALLV
PPTKFRPAAKAGDSVMENPQTVLLGKVVQSNIALGNAHINKLEGSKIADRWRDLQQSVNV
LFDSKSATSQNLKNANSGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGV
PPYFALRLTYPERVTPWNVGKLRDAIINGSDIHPGATHYADKVSIVRIPNNKKMRISLSR
KLPSSRGMAIQSRKISDYEFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEK
TLRMHYANCSSYNADFDGDEMNVHLPQDEISRAEAYNIVNANNQYIVPTKGDTVRGLIQD
HIVSSVLLTMKDTFLSREDFNQLLYASGVFAGGASQHSKVSVVDKACFVEPVLPAVLKPK
PFWTGKQVITAILNHLTRGYTPCTVDNKVKIPEQYFEGKEVKDDRDKLHKHLKNELKEVD
ETRLLIWKNEFVCGVIDKAQFGKYGLVHTVQELYGPDVAGLLLGAFSRLFTSFLQFHGFT
CGLDDLMVSPDCDKEMKVELEGEDVGEKVHRKFVNLENQKTGTRELQLETEKIIRSNGAT
ASASLDNLMQTELRDKGSMISKKWLPKGLLKPFPQNCISLMTISGAKGSSVNFQQISFLL
GQQELEGKRVPRMVSGKTLPSFTPWDFTSRAGGYIIDRFLTGLRPQEYYFHCMAGREGLV
DTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHQTSFLNNVE
VLRANQEIVYQKFNQPLEFNSYIQELPQGIRDKVQSYKQEITKDNREDLLMLIRQKYLSS
LAQPGEPVGVIAGQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAASIKTPI
ITCPLLEGKSMKDAERLVEKVKKLTVAELMQSIEVAKLPLEIHDNMPCRMYKLKVKLKQP
KHVSMHNCQETLRNVFLRALEDAIERHVALVSRINGIRSVKDSKAGEAVEDDVSINDVEH
ADDGNDDDNDGDDDNDKDETAEDLGSEFNKRKRQSTDSLEYEDGSDEEVEKEEEEPSSDL
ENGGDEGKVGTENESGNETDGEHPAEEQEGDMDKANPKSAEKFLQKKFDRATFVEVKNLN
LEVHFRFTNEPDILLAEVAQKAAKRVYIKGSGKLDQCQPVKYSVNVKQVCWNQNHPEINK
MKEKTKNSNDNKNEGDEHLPCALQASGVQLPAFWDMEELDVNHVYSNNIYTMLNTYGVEA
ARTCIIMEMKNVFGSYGVEIDYRHMSLIADHMTHTGGYRPMSRFGISESTSPFLKMSFET
ASKFIVEAASHGLVDDLETPTSRICLGLPVKVGTGSMELMQKLNI
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgactcagaccactgagggtgcctctgagattgtagagggtgtaaggttcagtttcatg
accgatgaagaggttagaaagcatagtattttaaaagtcacaaacccgattttacttgat
agtgttggaagaccaatgcccggaggattgtatgatcctttgttaggtccgatggatgag
cgtgcaccttgtaagtcgtgtgggcagaagtcgtatgagtgtccaggtcattgtggtcac
attgatcttgtttctccagtatacaacccgttgctatttgatatgcttttcaatctttta
cgaaggacatgcttcttttgtcatcatttcagagcaggcgaaaaggaggtcaataactgt
actactaaattaatgatgatagcacaaggtgatgttgttggtgcgaaagattatgtccct
aaatcagatagcgacgatgatgaaaaggaggaaggtagccaggttccaagttctaattta
ttaattggctcacaaagtgataggcctgaagaaacaaagcagaaagtttggacgtctgtt
cagtatatagaagcaagggctgttttgaaagaattcatgagtgacactggcaagacttgt
agacattgtgataccaaaaaccccaagattaccaagcccacttttggatcgtttcgtatg
gacatgtctcaagctgatatagaaaagaacattataaacggttatcagttgggaagcaat
cgtgatgaggaagagctgcttgatgctggggaagatgacaagacttcagaggtcataaat
gtaaacgaacaatcagaagatgatagaattgatactgcggggaccaattcatcttcatcc
aagtcatctaaacgaaagaaattaaagaagaaaaagtcaaatgtggcccatgattatgat
cagctgaaacaaaactatacagggtctcttttaccatctagggtcataagtataatcaag
gatttatgggaaaacgaggctggtctttgttcatatatatgcgatatgcagcaggagcag
ttccctggatcttttaaaagtactagttattctatgttctttattgaggctttacttgta
ccgcctacaaagttccgtcctgctgctaaagcaggtgattctgttatggagaatccacaa
acagtgttattaggcaaggtggtacagtcaaacatagcattgggaaatgctcatattaac
aaattagaaggatcaaagattgctgatcgctggagagacttacaacagtctgttaatgtt
ctattcgacagcaagagtgccacaagtcaaaatctgaaaaatgcaaattctgggatatgc
caattgcttgagaagaaagagggaatctttcgtcagaaaatgatgggaaagagagttaat
tatgcatgtcgatcggtcatttcacccgatccttatctagctgttaacgaaattggagtt
cctccttattttgcattgaggctgacctaccctgagagagtgaccccatggaatgtgggc
aaactgagggatgcgataattaatggttctgatatccatcctggagcgactcattatgct
gacaaggtgtcaatcgtcagaatacctaacaacaaaaagatgcgtatttctttatcccga
aagctaccctcttcaagaggtatggccatacaatccagaaagatctctgactatgaattt
gagggtaaagttgtatatcgtcacttgcaagatggagatattgttcttgtgaaccgtcag
cccacacttcacaagcccagtataatggcacatgtagttcgcgtactgaaaggggagaaa
actcttcggatgcattatgcaaattgcagctcctacaatgctgattttgatggagatgag
atgaatgttcatctcccgcaagatgaaatctcacgtgctgaagcttataacattgttaat
gcaaataaccagtatatagttccaacaaagggtgataccgttagaggcttgattcaggat
catattgtaagctctgtacttctcaccatgaaggatacgtttttgagccgtgaagatttt
aatcaacttctttatgcttctggtgtgtttgctggtggtgcttcacaacatagtaaagtt
tctgtagtagataaagcctgctttgtggagcctgttcttccagcagttttgaagccaaag
cctttctggactgggaaacaggtcatcacagcaatactaaatcatttgactagaggatat
acaccctgtactgttgataacaaggtaaagatccccgagcagtatttcgaaggaaaggag
gtcaaagatgacagggataaattacataaacatctaaagaacgaacttaaagaagttgat
gaaacaaggttgttgatctggaaaaatgagtttgtgtgtggtgtgatagacaaagctcaa
tttggcaagtatggcttggttcatacggttcaagagctatatggaccagatgttgcaggt
ctgctgcttggagcttttagtcgcttattcacttcctttttacagttccatggatttaca
tgtggtttagacgacctcatggtgtcaccagattgtgacaaagaaatgaaggtggaactt
gaaggtgaagatgtaggtgaaaaggttcatcgaaagtttgtcaatttggagaaccaaaaa
acaggaacaagagagctgcaattggaaactgagaaaataattagaagcaatggagcaaca
gcttctgcaagcttggataaccttatgcagacggaactaagggataaaggttctatgatc
agcaaaaaatggttgccaaaaggactcttaaaacctttcccacaaaactgcatttctctt
atgacaattagtggtgctaagggtagttcggtgaattttcaacaaatatcctttttactc
ggccaacaagagttagaaggcaaaagagtgcctcgaatggtttctgggaagactttacct
agctttacaccttgggattttacttctagagctggtggttatattattgatcggttttta
actggtcttcgcccacaagagtactattttcattgcatggctggccgtgaagggttggtt
gatacagcagtcaaaacgtctcgtagtggatatcttcaaaggtgtcttataaagaatctt
gagagtttgaaagtttcttatgattacacagtccgtgatgctgatggttccattgttcag
ttttattatggtgaagatggcgtagatgtgcatcaaactagctttcttaacaatgttgaa
gtgctcagagctaatcaagaaatcgtataccagaagtttaatcagccacttgaatttaat
tcatacattcaagagttaccgcaaggcatcagagataaagttcaaagttacaaacaggag
attacgaaggataatcgagaggatttgttgatgctaataagacaaaagtatctctcgagt
cttgctcagcctggagagccggttggtgtaatagctggtcaatctattggtgaaccttct
acccagatgacgctcaatacttttcatcttgcgggtcgtggtgagatgaatgttacactt
ggtattcctcgtttgcaggaaatcttaatgacggcagcagccagcataaagactcccatc
ataacatgtccattgctagaagggaaatcaatgaaagatgcagagagacttgtagagaaa
gtgaagaagctcacggttgcagaacttatgcagagtatagaagtagcaaaattgccactt
gaaattcacgacaatatgccgtgcagaatgtataagcttaaggtgaagttgaaacaacct
aagcatgtatcaatgcacaactgtcaagaaactctaaggaatgtttttctaagggcacta
gaggatgcaattgaaagacatgttgctttggtatccagaattaatggtatcagaagtgtc
aaggactcgaaagccggtgaggctgtggaagatgatgtgtctatcaatgacgtagagcat
gctgatgatggcaatgatgatgataatgatggtgatgatgataatgacaaggatgaaaca
gctgaggatcttggttcagagttcaataaacgcaaacgtcaaagcacggattctctggaa
tacgaggatggttctgatgaggaggtcgagaaagaagaggaagagccgtcgtctgatctt
gagaatggaggtgatgaggggaaagttggtactgaaaatgaaagtggcaatgaaacggat
ggagaacatccagctgaggaacaagaaggagatatggataaagcaaaccctaagtcggct
gagaagtttctgcagaaaaaatttgatcgggcaacatttgtcgaagttaaaaacctgaat
ctagaagtccatttcaggtttaccaatgaacctgatatcttgctggcggaggttgcacaa
aaggcggcaaaaagggtttacattaagggctcaggaaaacttgaccaatgccaaccggtc
aaatacagtgttaatgtaaaacaagtgtgctggaatcaaaaccacccagagatcaacaaa
atgaaagagaaaacaaaaaactcaaatgacaacaagaatgaaggtgacgagcatttacca
tgtgcattacaagcctctggagtacaacttcctgcattttgggatatggaagaactcgat
gttaatcacgtttattccaacaatatttacactatgctcaacacttacggagtagaagct
gcaagaacttgcatcattatggaaatgaaaaatgttttcgggagttatggtgttgagatt
gattacaggcatatgagtcttattgcggatcacatgactcatacaggtgggtaccgaccc
atgagtagatttggaatatctgaatccacatcaccttttcttaagatgtcatttgagact
gcatctaagtttatagttgaagctgcttctcatggcctggtggatgacttggagacacct
acatctaggatatgtctcggtttgcctgttaaagtcggtaccggttccatggagttgatg
cagaaattgaatatttag
DBGET
integrated database retrieval system
