Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_0406
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Entry
ECRM13516_0406 CDS
T03011
Symbol
yajK
Name
(GenBank) tRNA S(4)U 4-thiouridine synthase (former ThiI)
KO
K03151
tRNA uracil 4-sulfurtransferase [EC:
2.8.1.4
]
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Pathway
ecoh00730
Thiamine metabolism
ecoh01100
Metabolic pathways
ecoh01240
Biosynthesis of cofactors
ecoh04122
Sulfur relay system
Module
ecoh_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
ECRM13516_0406 (yajK)
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
ECRM13516_0406 (yajK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ecoh03016
]
ECRM13516_0406 (yajK)
Enzymes [BR:
ecoh01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.4 tRNA uracil 4-sulfurtransferase
ECRM13516_0406 (yajK)
Transfer RNA biogenesis [BR:
ecoh03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
ECRM13516_0406 (yajK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiI
THUMP
QueC
Diphthami_syn_2
Rhodanese
tRNA_Me_trans
Glyco_hydro_42
Motif
Other DBs
NCBI-ProteinID:
AHG13094
LinkDB
All DBs
Position
431039..432487
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AA seq
482 aa
AA seq
DB search
MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQR
LTIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQLEGKTFCVRVKRRGKHDFS
SIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIKGRYEGIGGFPIGTQEDV
LSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFV
AINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTN
LRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKAVKSKI
EAEEEKFDFSILDKVVEEANNVDIREIAQQTEQEVVEVETVNGFGPNDVILDIRSIDEQE
DKPLKVEGVDVVSLPFYKLSTKFGDLDQSKTWLLWCERGVMSRLQALYLREQGFNNVKVY
RP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttatcattaaattgttcccggaaatcaccatcaaaagccaatctgtgcgcttg
cgctttataaaaatccttaccgggaacattcgtaacgttttaaagcactatgatgagacg
ctcgctgtcgtccgccactgggataacatcgaagttcgcgcgaaagatgaaaaccagcgt
ctgactattcgcgacgccctgacccgtattcctggtatccaccatattctcgaagtcgaa
gacgtgccgtttaccgacatgcacgatattttcgagaaagcgttggttcagtatcgcgat
cagctggaaggcaaaaccttctgcgtacgcgtgaagcgccgtggcaaacatgattttagc
tcgattgatgtggaacgttacgtcggcggcggtttaaatcagcatattgaatccgcgcgc
gtgaagctgaccaatccggatgtgactgtccatctggaagtggaagacgatcgtctcctg
ctgattaaaggccgctacgaaggtattggcggtttcccgatcggcacccaggaagatgtg
ctgtcgctcatttccggtggtttcgactccggtgtttccagttatatgttgatgcgtcgc
ggctgccgcgtgcattactgcttctttaacctcggcggcgcagcgcatgaaattggcgtg
cgtcaggtggcacattatctgtggaaccgctttggcagctcccaccgcgtgcgttttgtc
gctattaatttcgagccggtcgtcggggaaattctcgagaaaatcgacgacggtcagatg
ggcgttatcctcaaacgtatgatggtgcgtgccgcgtctaaagtggctgaacgttacggc
gtacaggcgctggtcaccggcgaagcgctcggccaggtgtccagtcagacgctgaccaac
ctgcgcctgattgataacgtctctgatacgctgatcctgcgtccgctgatctcttacgac
aaagagcacatcatcaacctggctcgccagattggcaccgaagactttgctcgcacgatg
ccggaatattgcggtgtgatctccaaaagcccgacggtgaaagcggttaaatcgaagatt
gaagcggaagaagagaagttcgacttcagcattctcgataaagtggttgaggaagcgaat
aacgttgatatccgcgaaatcgcccagcagaccgagcaggaagtggtggaagtggaaact
gtcaatggcttcggcccgaatgacgtcatcctcgatatccgttctatcgatgaacaagaa
gataagccactgaaagtcgaaggggttgatgtggtttctctgccgttctataaactgagc
accaaatttggcgatctcgaccagagtaaaacctggctgttgtggtgtgagcgcggggtg
atgagccgtctgcaggcgctctatctgcgcgagcagggctttaacaatgtgaaggtatat
cgcccgtaa
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