Etheostoma cragini (Arkansas darter): 117937183
Help
Entry
117937183 CDS
T07493
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C-like isoform X1
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04020
Calcium signaling pathway
ecra04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117937183
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117937183
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117937183
Ion channels [BR:
ecra04040
]
Ligand-gated channels
Glutamate (ionotropic)
117937183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
NMDAR2_C
ANF_receptor
MatE
Motif
Other DBs
NCBI-GeneID:
117937183
NCBI-ProteinID:
XP_034716856
LinkDB
All DBs
Position
21:complement(4834703..4886372)
Genome browser
AA seq
1395 aa
AA seq
DB search
MAIPRGHPPPSPWLPFFLLLLISSPLPLYARPLLLHPSINVAVVFSGSSYQNEVRGRLSG
ENFVDLPIVVSPVTVLVNDTNPRDLLTRLCDTMAMEKLHGVVFEDDVGSGADTQVAEVAQ
ILDFLSTQTALPIVGISGGSAVVIPYKAEGSSFLQMGASLEQQIVCMFKIMEEYDWGEFA
VITSLLPGYDTFVDIVQSYTDTSYFLWNLQDVLSLEMSVGSNDGRTKRMLQQVDSQVLMA
YCSYEEAQYLFQQAAEVGLLGPGYIWILTSQAVGNPESPPPDSFPVGVIGVITDQGRKSL
RQRVREGVAIVAKGAESFQKQYGFIPEGLGDCNKPAKHSDNNTLFRHMLNVTWERKDLSF
NNQGFLSNPSMVIIALDRDRLWDKVGTFARGILQVRYPVWPRYGSFLEQVSDDRHLTVAT
LEEHPFVMVENVDPGTGTCVRNTVPCRRQSNQTEREATQRNIIGHAESYTKLCCKGFCID
ILKKLSRTIKFSYDLYLVTNGKHGKLVRGTWNGMIGEVVYRRADMAIGSLTINEERSEII
DFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYLSPV
GYNRSLVSAKSPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFL
ASYTANLAAFMIQEQYIDTVSGLSDKKFQKPHEHYPPFRFGTVPNGSTERNIRSNYPDMH
THMIKYNQKGVEEALESLKNGKLEAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYG
IALQKDSRWKRPIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNMAGVFY
MLLVAMGLSMLVFAWEHLLYWKLRHSLRKSPKLDFLLAISRGIYSCFNGMEDPGRSSGLP
KPDLTSNYAQANMLKMLRTAKDLVSTANVETSLDNATKTIEQLSRHGGSLPVRIPQVATE
AVPGGFAYITENHCSLTPPLSAVTSLKQQRGVTRPTPLRYTLPTRSSSCLYDQPLPVSSL
SSPHLALGEPLPHQHPHHYQTTGRLYVDTHPQSPFIPYTDLQLPDIYASHPVSLSHNQYG
QASFSRRKRRSKSFQCEDEDVERRNLRDQGKNDKSPIYLSELKANHLQDNHISNPSINNI
YSGEGMCPRVENYSSWPPEDLVLRGRRRHRRPSFLKATWGNEQIRQQDESQSSLSSQSPS
TLPDLFPCILTPTTPAKACNPAHLRNNLCLPRNQAYLHLREDQRRPNGRKGQKLRYSHSA
HLPTYGEAVRHGTGLGRGMVRRATSLLSRQYTHYLNSYPGLPLYHGPQDLHNHSQASSSH
PRTSPVCQLLACGGGRCGSQRALLYQDSVYGAYGVYQGSQTGSEAQAGKGAGGQPVGSPC
VLRPWRRVSSLESEV
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggccatacccaggggacatcctcctccctctccttggcttcctttcttcctcctgctc
ctcatctcctccccactccctttgtatgcccggccacttctcctccacccgtccatcaac
gtggcggtggtgttcagtggctccagctaccagaatgaggtcagaggtcgtctaagcggg
gaaaactttgtcgacctgcctattgtggtcagcccagtgaccgtgctggtcaatgacacc
aacccccgggacctgctgacacgcctctgcgataccatggcaatggagaagctgcatggc
gtagtgtttgaggatgatgtgggctctggtgcagacactcaggtggcagaagtggcacag
atcctggactttctctccactcagacagctctgccaatcgtaggcatcagtggcggctct
gcagttgtcattccatacaaggctgagggatcctccttcttgcagatgggagcatctctg
gagcagcagattgtctgcatgtttaagattatggaggagtatgactggggcgagtttgca
gtgatcaccagcttgctgccaggctacgacacctttgtggatatagtccagtcctataca
gatacctcctatttcctgtggaatctacaggatgtcttgtctctagaaatgtctgtcggg
tcaaatgatgggaggacaaaacgcatgctgcagcaggtggactcccaggtcctgatggcg
tattgctcctacgaggaggcacagtacttgtttcaacaggcagctgaggtgggtctgctg
gggccaggctacatctggatcctcaccagtcaggctgtgggcaaccccgaaagccctcca
cctgacagcttccctgtcggtgttattggtgtgattacggaccaggggagaaagagcttg
cggcagagggtgagggagggtgtcgccattgtagctaaaggggctgagagcttccagaag
cagtacgggtttattcctgagggacttggtgactgcaacaaacctgctaaacactccgac
aacaatactctgttcagacacatgctgaatgtgacgtgggaaagaaaagatctgtcattc
aataaccaaggcttcctctccaatccgtccatggtcattattgctctggaccgggataga
ctctgggacaaggtgggtacattcgcccgggggatccttcaggttcgctacccggtctgg
cctcgatatggcagcttcctggagcaggtgtctgatgaccgtcacttgactgtggccacg
ctggaggagcatccctttgtcatggtcgagaatgtggacccaggcactggtacatgtgtc
cgcaacacggtgccctgcaggcggcagtccaatcagacagagagagaggccacacagagg
aatattatcggccacgcagagtcctacaccaaactatgctgtaagggcttctgcattgac
atactgaagaaactgtcccgcaccatcaagttctcctatgatctctacctggtcaccaac
gggaaacatggcaagctggttcgtgggacttggaacggcatgattggggaggttgtgtat
agacgagctgacatggccattggctctctcaccatcaatgaggagcgttcagaaatcatc
gacttctccgtgccgtttgttgagacaggcatcagcgtcatggtagcccgcagcaatggg
acagtttccccatctgcctttcttgagccctacagcccagcagtttgggtcatgatgttt
gtgatgtgcctgaccgtggtggcggtgacagtttttgtgtttgaatacttaagtccagtt
ggatacaaccgcagtctggtcagcgccaaatctcctggtggtccgacgttcaccattggg
aagtcagtgtggctgttgtggggcattgtcttcaacaactcggtccccattgaaaaccct
aaaggaacaaccagcaagatcatggtcctggtctgggccttctttgctgtcatcttcctg
gcctcttacactgccaacctggctgccttcatgatccaggagcaatatatcgacacagtg
tctgggctctctgacaagaagttccagaaaccacatgagcattaccctccgttccgcttc
gggacggtcccaaacgggagcacagagaggaacatccgcagcaactaccccgacatgcac
acacacatgataaaatacaaccagaagggggtggaagaagctctagaaagcctcaaaaac
gggaagctggaagctttcatctatgatgctgctgttttgaactacatggccgggaaggac
gaaggctgcaagctggtgaccatcggcagcgggaaagtgtttgccaccacaggatatggc
atcgctctgcagaaggattcccgctggaaacggcctattgaccttgccctgctgcagttc
cttggagacggagatacccagcgcttggagacggtgtggttgtcaggcatctgccagaat
gaaaagaacgaagtaatgagcagcaagctggacattgacaacatggcaggcgtcttctac
atgctgctagtggccatgggcctcagcatgctggtctttgcctgggaacaccttctttat
tggaaactacgacactccctccgcaagtctcccaaacttgacttcctgttggccatcagt
aggggtatttacagttgtttcaatggaatggaagatcctgggcgttcatctggtttgcca
aaacctgacctgacctccaactacgctcaagcaaacatgctgaagatgcttcgcactgcc
aaggacctggtctccactgccaatgttgagacctctttggacaatgcaacaaagaccata
gagcagttgagccgtcatggcggaagcttgcctgttcgtattccacaagttgccactgag
gcggtaccaggaggatttgcttatataacagagaatcattgctccctaaccccacctctg
agtgctgttacctctctgaaacagcagaggggtgttacaaggccaacaccattgcgctac
acgcttccaactcgctcttcttcatgtctgtatgaccagccacttccagtgtccagcctc
agcagcccccacctggccttgggtgagccgcttcctcatcagcacccgcaccactatcag
accacagggagactctacgtagacacccatcctcagtcacccttcattccctacaccgat
ctccaactacctgacatctacgcctctcacccagtttccttgtctcacaaccagtatggc
caagcgagcttctcccgacggaaaagaaggtccaagagtttccagtgtgaggatgaggat
gtagagaggagaaatctcagggatcaggggaaaaatgacaaaagtcccatctatctgagt
gagctcaaagccaaccacctccaagacaaccacatctccaaccccagcattaacaacatc
tactcaggggaggggatgtgtcctcgggtagaaaattacagctcctggcccccggaggac
ctggtgctgagaggcagacgcaggcaccgccgcccctctttcctcaaagccacatggggc
aatgagcagatacgccagcaggacgaatctcagtcatctctgtccagccaatcaccttcc
acactgccagacctgttcccatgcattctcacaccaaccactcctgcaaaggcctgcaac
cctgctcaccttcgaaacaacctgtgcctcccccggaaccaggcctacctccacttgagg
gaggaccagaggaggcccaatgggcgtaagggccagaagctgcgctactctcactccgcc
cacctgcccacgtatggagaggcagtgcgacatgggactgggttagggcgggggatggta
cggagagccaccagcttgctcagcagacagtacacccactacctgaactcataccctgga
ctacccctctaccatgggccccaagacctgcacaaccacagccaggcctccagcagccac
ccgagaaccagcccagtgtgccagctgttggcatgtgggggtgggcgatgtggaagccag
cgggctctgctgtaccaggacagtgtgtatggggcttatggggtctatcagggatcccag
actggatcagaggcccaggcaggtaagggagcagggggtcagcctgtggggagcccctgc
gtacttcgtccctggcgacgagtgtccagcctggagtctgaggtctga
DBGET
integrated database retrieval system
