Etheostoma cragini (Arkansas darter): 117944834
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Entry
117944834 CDS
T07493
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04020
Calcium signaling pathway
ecra04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117944834 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117944834 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117944834 (grin1b)
Ion channels [BR:
ecra04040
]
Ligand-gated channels
Glutamate (ionotropic)
117944834 (grin1b)
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
SIP
DUF6724
Motif
Other DBs
NCBI-GeneID:
117944834
NCBI-ProteinID:
XP_034727891
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Position
5:complement(16585103..16629811)
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AA seq
950 aa
AA seq
DB search
MELRGMLLLTVLQCCSVARGGCEPRLVNIGAVLSHKRYEQVFKEAVSQANTLYGKEKFKM
NAISVTHKPNAIQMALSVCEDLISNQVYAILVSHPSQSNDHLTPTPVSYTAGFYRIPVVG
LTTRMSIYSDKSIHLSFLRTVPPYSHQAHVWFDLMREFRWNHIILIVSDDHEGRAAQKRL
ETLLEERETKTKNRNYENLDQQNFDFRRTPKAEKVLLFSPDTNLTALLLEAKDLEARVII
LSASEDEAAAVYKAARQLNMTGSGYVWLVGEREMTGKALNEAPDGLLGLQLINGKNESAH
IADAVAVVAQSLQELFEKENITEPPRGCVGNTNIWRTGPLFKRVLMSSKYPDGLTGRIEF
NDDGDRRFATYSILNWQQKPSRLVQVGVFNGSQVVMNPQRKIIWPGGETEKPVGYQMSTK
LKIVTIHQEPFVYVKPTKTDGTCKEEYTVNGVLIKKVICTGPNGTTPGQPIVPQCCYGFC
IDLLIKLAMSMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTI
NNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYL
LDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGF
AMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVEL
STMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG
IGMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFML
VAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQVPDSILLYSTLLYSTL
TVFYSTVLYSTVCVFLNLLCSYFCSYILLCCCSRYFIFPGTNDLNLILFY
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgtggcatgctccttctcaccgtgctacaatgctgttcggttgctcgtggt
ggttgcgagccccggctggttaacatcggtgcagtgctgagtcataaacgctacgagcag
gtgtttaaggaggcggtaagccaggccaacaccctgtacggtaaagagaagttcaagatg
aacgccatctccgtcacacacaaacccaacgccatccagatggctctgtccgtctgcgag
gacctcatctccaaccaggtgtatgcgatcttggtcagtcacccttctcagtccaatgac
cacctcaccccgactcccgtctcctacaccgctggtttctaccgaatcccagtggtcggc
ctgacaacacgcatgtccatctactctgacaagagcatccacttgtcgttcctgaggaca
gtgcctccgtactcgcaccaggctcatgtctggtttgaccttatgagagagttcaggtgg
aaccacatcatccttatcgtcagcgacgaccacgaaggacgagccgctcagaagagactg
gagacgctgctggaggagcgagaaaccaagactaaaaacaggaactatgaaaacctcgac
caacagaactttgacttcaggagaacacccaaggcagagaaggtgctgctcttcagccca
gacaccaacctgacggctctgctgctggaggccaaagacctggaggcccgagtcatcatc
ctgtctgccagtgaggacgaagctgcagcagtgtataaagcagcccgtcagctcaacatg
accggctctggttacgtctggctggtcggagagagagagatgaccggcaaagctctgaat
gaagctccagatggcctgctgggccttcagctgattaacggtaaaaacgagtcggctcac
atagcagacgctgtggcggtggtggctcagtctctgcaggagctgtttgaaaaggagaac
atcacggagcctccgcggggctgcgtgggaaacactaacatctggaggacaggaccactc
tttaaacgagtgctgatgtcatccaagtaccctgacggtctgactggacggatcgagttt
aacgacgacggcgaccgacgcttcgcaacctatagcatcctgaactggcaacagaagcca
agtcgcctcgtccaggttggagtcttcaacggatcacaggttgtgatgaaccctcagaga
aagatcatctggcctgggggagagacagagaaaccagttggataccagatgtcgactaaa
ctgaagattgtaacgatccatcaggagccatttgtttacgtgaagccaacaaagactgat
gggacttgtaaagaggagtacaccgtcaacggagtcttaatcaaaaaggtgatctgtacc
ggacccaacgggaccacaccaggtcagcccatcgtccctcagtgttgctacggtttctgc
attgacctgctcatcaagctggcgatgagcatgaacttcacctacgaagttcacctggtc
gctgatgggaaatttggcactcaagagcgcgtgaacaacagtaacaagaaggagtggaac
ggaatgatgggggagcttttaggaggtctggccgacatgatcgtcgctcccctcaccatc
aacaacgagcgtgctcagtacattgagttctccaaaccctttaaataccaggggctaacc
atcctcgtcaagaaggaaatccctcgcagtactctggattcattcatgcagccgttccag
agcacactgtggctgttagtcggtctgtcggtccatgtggtggcagtgatgctttaccta
ttagaccggttcagcccgtttggaaggtttaaagtaaatagtgaagaagaagaagaagac
gccctcaccttgtcctctgccatgtggttctcatggggagtgctgttgaactctgggata
ggagaaggagctcccaggagtttctcagcgaggattctgggtatggtgtgggcaggtttc
gctatgatcattgtagcatcatatactgccaacctggcagccttccttgtgttggaccgg
cctgaggagcgcatcactggcatcaatgaccccaggctgcgtaacccatcagataagttc
atctacgccacagtgaagcagagttcggtggatatctactttagacggcaggtggagctg
agcaccatgtaccggcacatggagaaacacaactacgagagtgctgctgaggccatccaa
gccgtcagagacaataagcttcatgccttcatctgggacagcgctgtgttggagttcgag
gcatcacaaaagtgcgatctggtgacgacaggagagcttttctttcgctccggattcggg
attggaatgagaaaagacagtccgtggaaacagaacgtttctttggctattctcagctct
catgagaatggcttcatggaagacctggacaagacgtgggttcgataccaggagtgtgac
tccaggagcaacgcccccgctacccttacgttcgagaacatggcaggtgtgttcatgctg
gttgccgggggcatcgtcgccgggatcttcctcatcttcattgagatcgcttacaaacga
cacaaagacgctcgaaggaaacagatgcagcttgcctttgctgctgtgaacgtctggagg
aaaaacctgcaggtaccagactctattttgctgtactctacactgctgtactccactcta
actgtattctattctactgtactgtactctactgtgtgcgtgtttttgaacctactctgc
tcttatttctgctcttatattcttctgtgctgctgttcacgttattttattttcccagga
acaaatgatttgaatttaatactattctattag
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