Etheostoma cragini (Arkansas darter): 117950367
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Entry
117950367 CDS
T07493
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like isoform X1
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04010
MAPK signaling pathway
ecra04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117950367
04020 Calcium signaling pathway
117950367
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117950367
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117950367
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
117950367
NCBI-ProteinID:
XP_034737220
LinkDB
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Position
9:complement(14497497..14513614)
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AA seq
1404 aa
AA seq
DB search
MTKGQKEKQRREMALTLPEQELPNPHCISIQEELLPYPDLGPVVFGCLKQTTSLRNWCLQ
VAHSPWLDYLSVLIIVLNCVNLSIYKPGEKKNNTQEILDFLMFLYFIVEMLIKIVALGVL
GYKGSYLSNHWYKLDFFINFGKLMDIMFEIFDIHLQFCQVLSPLRLISRVPSMLNVVTVL
LGTVPMLGNVMVLYIFVIQIFAVVGVQLWAGQLRNRCFLGEDIPTKYNVSLSPYYMNKYE
EKLPFICSRDGKSGMQHCRDVPPFHQNGKTCALAAHEYASAVNGVVSSGAGASVNACVNW
NMYYNVCRPGDQNPYMDSISFDNFAYSWVTIFQVVTLEGWAEIMFYIMDAHSCWSVIFFV
LVTVMGSFIMMNVCAVVIATQFSDNMKQDAGEQSVGALAIARLCGKLIGWLQAIYSKYNR
HKVHPHGGSSRIDDSMIYQVWRPFMEKLKTTVHSKLFDRLVMFAVFLSIVTMAIEHNDQP
QELTRMLQISNIVFTIIFVLELIIKLLALTWTYFTDSNNIFDFVIVIISLWEIISKADSR
LSVLRAFRLLRFVRLLHFLPYLKRQLLVLKRTMTEAATLCMLLLFVIFIFSVMGMHLFGG
KFFFETQHGNIIVERKNFDTLLWSMVTVFQILTQDDWNVVMYNAMAKTSKWASLYFIAVI
ILGKHVLLNVLVGIVVQSFQARRFSSMDQDSSLPSCESTSSTPEILTPENPAQTDNNSNG
PTGPNRGLSFSLCCPRINNAINAAPGDDSAPTDTNGGNRCLNLIQKMVNWCKEREEWSCY
VFLPQNRLRIFCQRLISHKLFDHIILVFILLSCATIAMERPAIDPKSMERWVLNTAGYVF
SAVFFVEMLFKVIALGLLFGKESYCRSAWNAVDGFLVLLSLVDVSVSLASTSEKNMLGML
KVLRLLRTLRPLRVIKRAPKLKLAVEALIASVKPIGNIVIICCAFLFFYGILGLQLFKGK
FFYCLGQNTVNITNKIECLSANYRWVQKVYNFDSLPQALMSLFVMYSKDGWVNIMYDGLD
AVGVDQQPITNYNEWMLIFFISFMILSFFLLDMFIGVMVETFHQCQQNQKKVDTALLENS
TVSQDQCKESEEIPYYTDYSPIRRSIHTFCTSNVLDLFMAAVIFLSVMMMTIQHYDQPLY
VEKITDYSYYVFTIILIIEVMLKLVAFGILRFIQSRWNLLDIAVVLISILSIVFQVMDMA
DSIPINPSILRVCRVLRLAQVLKAKKIRVLLKTIIKTLSQVGNICLLFAFFFFIYAALGV
ELFGRLECTNDNICLGLHQYANFKHFGMALLTLYEVCTGDNWSGIMADTLRGCRPDDEGC
SNYLYWVSPLFFSSFVVMAQFVLVNLVVAAIMQALEDSHENKPTNFCLPLEDEDELEQAR
PSAQNVGPSSSHDGPATTTQMDPQ
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgactaagggacagaaggagaagcagcggcgggagatggcacttactttaccagaacaa
gaacttcccaacccacactgcatctccatacaggaggagttgctgccctacccggacctg
gggccagtagtttttggctgcttaaaacagaccacaagcctccgtaactggtgtctgcaa
gtggcccatagcccgtggttggattatctgtctgtactgataattgtgctcaactgtgta
aatttgtccatttacaagcccggggaaaagaaaaacaacacacaggagatattggatttc
cttatgtttctctactttattgtggaaatgctcatcaagattgtggccctgggagtcttg
ggctataaagggagttaccttagcaaccactggtacaagctggacttcttcatcaacttt
ggaaagttgatggatattatgtttgaaatatttgacatccacttgcagttctgtcaagtg
ctctcgccattgcgactcattagcagagtaccaagtatgctcaacgttgtgacagtactc
ttaggcaccgtgcccatgctcggaaatgttatggtcctctacatcttcgtcatccaaatc
tttgccgttgtgggagtccagctgtgggcaggacagctgcgcaaccgctgcttcctggga
gaggacattcccacaaagtacaacgtttccttaagtccatattacatgaacaagtatgag
gaaaaactcccatttatctgttcgcgtgatggcaaaagcggaatgcaacactgccgagat
gtgccaccttttcaccagaatgggaaaacctgcgcattggctgctcacgagtatgcgtca
gctgtaaatggggtagtctcgtcaggggccggggccagtgttaacgcctgtgtcaactgg
aacatgtactacaatgtctgtcggcccggggaccagaacccttacatggacagtatcagc
tttgataactttgcttactcctgggtaaccatattccaggttgtcacactggaaggatgg
gcggaaatcatgttttatattatggatgctcattcttgctggagtgttattttttttgta
ctcgtcactgttatgggctcctttatcatgatgaacgtctgcgcagtcgtcatcgccacc
cagttctcggacaatatgaaacaagatgcaggagagcaaagtgttggtgctctggctatt
gcacggctctgtggcaagttaattggatggctgcaggcgatctacagtaaatacaacaga
cataaggtgcatcctcatggcggcagcagcaggattgatgactcaatgatctatcaggtc
tggagaccattcatggaaaagcttaagacgactgtccacagtaaactctttgaccgattg
gtcatgtttgcagttttcctcagtattgtcaccatggccatagagcataatgaccagccc
caggagttgacacgtatgttacagatcagtaacattgtcttcaccattatatttgttttg
gagttgatcataaagctgctggctctcacgtggacatactttacggactcaaacaatatc
tttgactttgtcattgttatcatcagtttgtgggagataatatccaaagcagacagccgg
ttgtcagttctgcgtgcatttcgtctgctgcggtttgtgaggttgcttcacttcctccct
tacctgaagagacaactgctcgtgctgaagaggaccatgacagaggcagccacactctgc
atgctactgctgtttgtcatctttattttcagtgtaatgggtatgcacctgtttggaggc
aaattcttcttcgagacgcagcatggaaatatcatcgttgagcggaaaaactttgacact
ctgctttggtcaatggtaacggtgttccagatcctgactcaggatgactggaatgtggtg
atgtacaacgctatggcaaaaacctccaaatgggcctctctctactttattgcggtcatt
attttgggaaaacatgttcttctcaatgtacttgtgggtatagtggttcagagcttccag
gctaggcgcttctcaagtatggatcaagactcttctctcccttcctgtgagtctaccagt
tccactccggaaatcttgacccctgaaaaccctgcacagacagataacaatagcaacggc
cccacaggacccaaccgaggcctctctttctctctttgttgtcccaggataaacaatgcg
attaacgcagccccaggggacgactctgccccaacagataccaatgggggcaatagatgt
ttgaacttgatccagaaaatggtcaactggtgcaaagaacgtgaagagtggtcatgttat
gtgtttttgccacagaacaggctccgcatcttttgtcaacgactgatctctcacaagctg
ttcgaccacattattctggtcttcattctcctcagctgtgccaccatcgctatggagagg
cctgcaatagaccctaaaagcatggagcgttgggtcctgaatacagccggttacgttttc
tctgctgttttctttgtagagatgctctttaaggttattgctcttggtttgctgtttggg
aaggagagctactgccggtctgcctggaatgctgtggatggttttttggtgttactgtct
ttagtcgacgtctcagtctctttggccagtacaagtgaaaaaaatatgctgggcatgctc
aaagttttgcgcctgctacgcacactgcgcccgctgagggtgatcaagcgagccccaaaa
ctgaagctggctgtggaagccctgattgcttcggttaaacccattgggaacattgttatt
atttgctgtgccttcctctttttttatggcattcttgggttgcagttgttcaaagggaag
ttcttctactgtctgggtcaaaacacagtcaacatcaccaacaagattgaatgtctgtcg
gccaactatcgctgggtacaaaaggtgtacaactttgacagcctgcctcaggctctgatg
tccttattcgtaatgtactctaaggatggctgggtgaacattatgtatgatgggctggat
gctgtgggagttgaccaacagcctataacgaactacaacgaatggatgcttatttttttc
atcagcttcatgattctgagcttttttcttctcgacatgtttattggtgtaatggtggag
accttccaccagtgccagcagaatcaaaaaaaagtagatacagcattactagaaaattcc
acagtatcacaggaccagtgcaaggagtctgaggagattccatattacacagattactcc
cccattcgtcggtctatccacactttctgtaccagtaacgtcctggacctcttcatggct
gccgtaattttcctcagtgtcatgatgatgactatccaacattatgatcaacctctgtat
gtagagaagattacagactattcctactatgtgttcaccatcatcctgatcatcgaagtc
atgctaaagcttgtggcgtttggcatactgaggttcatacaaagcagatggaatctgctg
gacatcgctgttgtcttgatttcaatactcagtattgttttccaagtgatggatatggca
gactcaattcccattaatcccagcatccttagagtctgtagagtactcagactagcacaa
gtgctaaaggccaaaaagatacgagttctgctgaaaaccattatcaagacgctatcacag
gttggaaatatttgtcttctctttgcattcttcttcttcatctacgctgcgctgggagtg
gagctctttggcaggctagaatgcaccaacgataacatttgcctgggtttacatcaatac
gccaatttcaaacactttgggatggccctgctcacgctctacgaagtttgcaccggagac
aactggagcgggataatggcagacacattgaggggatgccgtcccgacgatgagggctgt
tcgaactacttgtactgggtctctccactcttcttctccagttttgtggttatggcccag
tttgtgctggtaaacctggtggtggcagccatcatgcaagctctagaggacagccacgag
aacaaacctactaacttctgtctccccctggaggacgaagacgagcttgagcaggccagg
ccatcagcccagaatgtgggacccagttccagccacgacgggccagccacgacaacacag
atggatcctcagtga
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