Etheostoma cragini (Arkansas darter): 117958593
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Entry
117958593 CDS
T07493
Symbol
grin2ca
Name
(RefSeq) glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04020
Calcium signaling pathway
ecra04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117958593 (grin2ca)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117958593 (grin2ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117958593 (grin2ca)
Ion channels [BR:
ecra04040
]
Ligand-gated channels
Glutamate (ionotropic)
117958593 (grin2ca)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
NMDAR2_C
Motif
Other DBs
NCBI-GeneID:
117958593
NCBI-ProteinID:
XP_034750962
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All DBs
Position
15:18866205..18942323
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AA seq
1411 aa
AA seq
DB search
MGVRLGCLSDSPWWPPPPLLLLLLFCTVPFCSGRPFGIPTPSVNVAVVFSGSAYQTEIKG
RLSRENFMDLSLEVNPITVLVNNTNPRALLTRICDTLSTNRVHGVVFEDNVGSEAVAQIL
DFISTQTAVPIVGISGGSAVVLPYKGEGSNFLQLGSSIEQQINGMFKVMEEYNWDSFVVI
TSLYPGYETYVDYIKSFTDTSYFIWDLQDVLTFDMSADGMNDIRARRLLQQIDAQVLLVY
CSHEEAQYLFTMAAESGLVGPGYIWIIPSLAVGNPDILPPESFPVGLISIITDRWRMSLR
KRVRDGVAIVVKGVQSFKKERGFIPEGQSDCHNPVKPTATNDTLFRHMLNVTWEHNDFSF
NSNGYLVNPAMIIITLDRERQWDKVGTYEMGILQMRYPVWPRYGSYMEPVSDYRHLTVAT
LEERPFVIVEAVDPVTGTCVSNTVPCRRQSNRTEAIVGHTEPYTKLCCKGFCIDILKKLS
RTIKFSYDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPF
VETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFVFEYCSPVGYNRSL
VSAKDPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTAN
LAAFMIQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKY
NQKGVEDALNSLKTAKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKD
SRWKRPIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAM
GLSLLVFAWEHLLYWKLRHSVRKSEHLDFLLAISRGIYSCFNGVEQTDHNGSMQTSDVTT
NYTQANMLKMLQTAKDMVSSARVENSLDNATKTIESWSRRGGDNVRLGLPPRVTTTEITH
GRLPYISSITDNHSPYPQRALTPTFPIPYGDSSTQPLLDKPQVVTRPHQLRYTLPNRNSQ
HVLERTLPISSLSSPHIAIRDPVPTSSNPHHSSRLYVENQARNPTSPFVSYRELQVPDIY
VEHKGPLRRKFSYPPDCVTRRRRSHSYVFDAANPRMRTDYDEPQSCLAELRANHLLNNHA
PVAAAMACNARHYTGGSASCNSCMKSYLEPEMEDVPLLGKDKLNRRASFLKATWGNDRIH
QVDETKPSTSSTRIDMPDLFPRVVVANPKPHKLYGSLGHNLSCYPLAAEPAYLDPAHMGS
YPYKQKLKYTESTRLPSYREAILQNAAALRRSSSTVVHRHYSTYLNSYTDLPVYVGPMAH
RPSQFYDSSKDMCHLFPCTSHCPDNAAMLPRMSDRQVVYHNNTFGSYDGTGNREDPGSGS
RERRQVLVARRVKSPYVPKPWGRVSSLESEV
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgtctaggctgcttgagcgactccccgtggtggccgccgccgccgctgcta
ctgctgctgctgttctgcacagtccccttctgctcgggccggccctttggaattcccacg
ccctctgtgaacgtggcggtggtgttcagtggatcggcataccagacagagattaagggg
cggttaagtcgggaaaacttcatggacctgtctctggaggtgaaccccatcactgtcctg
gtcaacaacaccaacccacgggccctgctcacccgcatctgtgacaccctgtctaccaac
cgtgtccatggagtggtgtttgaagacaatgttggctcggaggccgtggcacaaatcttg
gacttcatttctactcagacggcagtgcccatcgtgggaattagtggaggctctgctgtc
gtcctgccatacaagggtgagggttccaacttccttcagctgggctcctccattgagcag
cagataaacggcatgttcaaggtgatggaggagtacaactgggacagttttgtggtcatt
accagtctttacccgggctacgaaacctacgtggattacattaagtccttcaccgacacc
agctacttcatatgggatctgcaggacgtgctgactttcgacatgtccgccgacggcatg
aacgacatccgggcacgaaggttgctgcagcagatcgacgcacaggtgctgttggtctac
tgctcccatgaagaggctcagtacctgttcaccatggcagccgagtctggacttgtgggg
ccaggctacatctggattatccctagccttgcagtggggaacccagacatcctcccacct
gaaagcttccctgtggggctcatcagcatcatcacagaccggtggaggatgagcctgaga
aagagggtgagggacggggtagccatcgtggtgaaaggcgtgcagagctttaagaaagag
agaggcttcattcccgagggccagagtgactgccacaatcccgtcaagccaactgctact
aatgacactctgttcaggcacatgttgaatgtaacctgggaacacaatgacttctccttc
aacagtaacggttacctggtgaatccagccatgataattatcactttggacagagagcga
cagtgggacaaggtggggacctacgagatgggaatcctgcaaatgagataccccgtgtgg
ccacggtatggctcctacatggagccggtgtcagattacaggcatctgacggtggccacc
ctggaagagaggcccttcgtcattgtggaggcagtagaccctgtgactggtacatgcgtc
agcaacactgtaccctgcagacgacagtccaacaggacggaggctattgtaggtcacact
gagccatacactaaactatgctgtaaaggcttctgcatagacatcctgaaaaagttgtcc
cgcaccataaagttttcctacgatctctacctggtcaccaacggcaagcacggcaagctg
gtccgaggcatttggaatgggatgatcggagaggtgttctacaagcgggcagacatggcc
atcggctcgctgaccataaacgaagagcgatctgagattattgacttctctgtgccattt
gtggaaactgggatcagtgtgatggtggccagaagtaacgggactgtctcaccatctgcc
tttttagaaccatacagtccggcggtttgggtgatgatgttcgtcatgtgtctgactgtc
gtggccatcacagtctttgtctttgaatactgcagtccagttgggtacaaccgcagcttg
gtcagtgccaaagatcccggaggtccgaccttcactattgggaagtctgtgtggctgctg
tggggaattgtcttcaacaactcagtccccattgagaatccaaagggcaccaccagtaag
atcatggtcctggtctgggctttctttgccgtcatcttcctggcttcctacacagccaac
ctggcagccttcatgatccaagagcaatacatcgacacggtctctggactgagtgacaaa
aagtttcaaaagccacaggaacagtaccctccattccgctttggtacagtcccaaatggc
agcacagagcgcaacataaggagtaactaccctgagatgcactcccacatggtcaaatac
aaccagaagggagtagaggatgcccttaacagcctcaaaacagcgaaactggatgccttt
atctatgatgctgctgtgctgaattacatggctggcaaagacgagggctgcaagctggtg
accattggcagtgggaaggtgtttgccaccactggttatggcattgccctgcaaaaggat
tcacggtggaaacgacccatcgacctggcactgctccagttcctggctgacggtgacaca
caaaaactgcaaaccgtctggctcacaggcatctgccgtaatgagaagaaggaggtgatg
agcagtaagcttgacattgacaacatggctggggtcttctacatgttgcttgtggccatg
ggcctgagcctgctggttttcgcttgggaacatctgctctactggaaattacgacattcg
gtccgcaaatcagagcatctggactttctcctagccatcagtagaggtatctacagctgc
ttcaatggagtagagcaaactgaccacaatggcagtatgcagacttcggacgtcactacc
aactacacacaagccaatatgctaaagatgctgcaaacagccaaggacatggtgtcctct
gccagagtggagaactccctagacaacgccaccaaaacaatagagagctggagcaggcga
gggggcgacaatgtgcggcttggcctgccacccagagtgacaaccacagaaatcactcat
ggccgtctgccctatatctccagcatcacagacaaccactcaccataccctcagagagca
ctcacacccacctttccaattccttatggagacagctctacccagcccctcctggataag
cctcaagtggtgacccgaccccaccagctccgctacacgctgcccaaccgcaacagtcaa
catgtcttagagaggactctgcctatctccagcctcagcagtcctcatatcgctattcgg
gaccctgttcccaccagttctaacccccaccacagcagcaggctgtatgtggaaaaccag
gctcggaaccccacgtccccttttgtttcttacagggagttacaggtgcccgatatctac
gtggaacacaaagggccgctgaggaggaagtttagctacccccctgactgtgtgacccgg
agaaggcgctcccatagctatgtgtttgatgctgcgaaccccagaatgagaactgactat
gatgaacctcaatcctgccttgctgagttaagggccaatcacctcctgaacaaccacgcc
cctgttgctgctgccatggcctgcaatgcaagacactacacagggggaagcgcaagttgc
aactcctgtatgaagtcctatctggagcctgaaatggaagacgtaccactcttggggaag
gacaaactcaaccgtcgcgcctcattcctcaaagccacgtggggcaacgacaggatccat
caggtagatgaaacaaagccctccacatcctccacccgcatagacatgcctgacctgttc
cctcgggtggtagtggccaacccaaagccccacaagctatacggcagtcttgggcacaac
ctgtcctgctaccccttggctgctgagcctgcctacttggacccagcccacatgggctcc
tacccttacaagcaaaagctcaagtacacagagtccacccggctgccctcttacagggaa
gccatcctgcagaatgccgctgccctgcgtcgctcctcctcaacagtggtgcacagacac
tactccacttatttgaactcgtacacagacttaccagtgtatgtggggccaatggcccat
agaccgtcccagttctatgacagttctaaggacatgtgccacttgtttccttgtacaagc
cactgcccagataacgcagcaatgctgcctcgtatgagtgacaggcaggtggtttaccac
aacaatacgtttgggtcctacgatggcacaggaaacagggaagacccaggctctgggagc
agagagcgtaggcaggtgttggtggcgcgcagagtcaaaagtccctatgtgccaaagccc
tgggggagggtgtccagcctggagtctgaggtctga
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